prot_L-elsbetiae_contig5822.14261.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5822.14261.1
Unique Nameprot_L-elsbetiae_contig5822.14261.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length287
Homology
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BLAST of mRNA_L-elsbetiae_contig5822.14261.1 vs. uniprot
Match: D7FTF0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF0_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 4.340e-32
Identity = 77/146 (52.74%), Postives = 96/146 (65.75%), Query Frame = 0 
Query:   63 EKLKAAVANDSWEDASALVADATSSGLRLDGRVHTAALRAALGGGVPRCVLSAVADMRADGFVPNILLYNKAISLCGRKGMWKEALSLLRDAQKVSTESTGTTLIGRHRGPDXXXXXXXXXXXXXXXXXXXXXXXXXEMQAAGIQP 208
            +++KA+ A+ SWE+A A VA+  SSGL+LDGRVHTAA+RAAL GG  R VL+ +A MRADGFVPNI LYNKAISLCGR+G W++A+ LLRDAQ+VS+        G+ RG D                         EMQAAGI+P
Sbjct:   37 DRVKASAASGSWEEALAHVAEVRSSGLKLDGRVHTAAIRAALDGGKARPVLATIAAMRADGFVPNISLYNKAISLCGRQGAWEDAVFLLRDAQRVSSP-------GQRRGVDVVTFSAAVAACRDGGEWRQALALMEEMQAAGIKP 175
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5822.14261.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTF0_ECTSI4.340e-3252.74PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 243..284
e-value: 8.2E-10
score: 38.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 80..140
e-value: 3.2E-4
score: 20.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 131..155
e-value: 0.0032
score: 15.5
coord: 176..209
e-value: 1.2E-5
score: 23.1
coord: 246..279
e-value: 5.0E-8
score: 30.6
coord: 212..245
e-value: 0.0016
score: 16.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 176..206
e-value: 0.015
score: 15.5
coord: 212..239
e-value: 0.6
score: 10.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..208
score: 11.126
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 209..243
score: 9.394
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 92..126
score: 5.733
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 127..161
score: 8.429
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 244..278
score: 12.912
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 57..238
e-value: 1.7E-29
score: 105.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 239..285
e-value: 2.4E-12
score: 48.7
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 173..284
coord: 66..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5822contigL-elsbetiae_contig5822:1133..10169 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5822.14261.1mRNA_L-elsbetiae_contig5822.14261.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5822 1133..10169 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5822.14261.1 ID=prot_L-elsbetiae_contig5822.14261.1|Name=mRNA_L-elsbetiae_contig5822.14261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=287bp
GTPPANRQGAQGWSRGRGRGRGHGRGGTRAAGAPARRGRHRGGRGGRGNN
GGSGGQELRELAEKLKAAVANDSWEDASALVADATSSGLRLDGRVHTAAL
RAALGGGVPRCVLSAVADMRADGFVPNILLYNKAISLCGRKGMWKEALSL
LRDAQKVSTESTGTTLIGRHRGPDVVTFSAAVAACRNGGEWRQALSLMEE
MQAAGIQPDQIAFGTAVSACAMGGQWRQAVSFLADMRRVNLRPDVVTYSS
AIKACGAEGRWEEALGLLKEMEGGGVRPNLITYTGGM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf