prot_L-elsbetiae_contig582.14258.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig582.14258.1
Unique Nameprot_L-elsbetiae_contig582.14258.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length358
Homology
BLAST of mRNA_L-elsbetiae_contig582.14258.1 vs. uniprot
Match: A0A6H5J6J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6J4_9PHAE)

HSP 1 Score: 417 bits (1072), Expect = 2.250e-142
Identity = 226/319 (70.85%), Postives = 266/319 (83.39%), Query Frame = 0
Query:    5 RRTRPTTALWGAATLL----AGT-RLASGATILITSPDSSSAYRAGDAVPVEWDYEGTGENFSINLLKGGEQLDNGDLCAAEENGVCFDLTQDQMVLLPDTGLESGTDYTIHVKDQSSDAEHESPAFTILGTPDANVEVTTPNGFTSLNQGGEVSVSWLYVGANQLFDIYVRQNGKRVSDNLCAGQSEGSCKSTGPVASATVTLPVELENSGDYRLLVVDKVDDDAWGLSAELPVGVAASSTEGSDSESSSASKLGLVIGLAAGGVCLLAALLACLRKRNKDHRREQKMATLDMLNKRRPAPSVSLAVEGMAEPNSPDQ 318
            +RT P TA   AA       AGT RLA GAT+ I+SP S+S+Y AGDAVPV+W YEGTGENF+I+LLKG E++   DLC+AEENGVCFDLTQDQ V+LPDTGLESG+DYT+ V+DQSSD E  S  FTI+GT  +NVE+T+P+G+T+LN GG VSVSWLYVG N  FDIY+RQNG+RVS NLCA Q  GSC +T PVASAT+TLP E+EN+ DYRLLVVDKV+DDAWGLS ELPVGVAA+S + + S+SS+A+KL LVIGL+AGGVCLLA LLA LR RNK+ RRE+K+ATLDMLNKRRPAPSVSLAVEGMAEP+SPDQ
Sbjct:    3 KRTPPPTAFGRAAVATFVAAAGTARLALGATLDISSPASTSSYHAGDAVPVQWIYEGTGENFAIHLLKGDEEV--ADLCSAEENGVCFDLTQDQTVILPDTGLESGSDYTVRVRDQSSDLEDTSETFTIIGTSTSNVEITSPDGYTTLNAGGVVSVSWLYVGENMEFDIYLRQNGERVSSNLCADQEGGSCTATIPVASATITLPEEIENAADYRLLVVDKVNDDAWGLSVELPVGVAAASVD-TGSDSSAATKLALVIGLSAGGVCLLAVLLAGLRTRNKNRRREEKLATLDMLNKRRPAPSVSLAVEGMAEPDSPDQ 318          
BLAST of mRNA_L-elsbetiae_contig582.14258.1 vs. uniprot
Match: D7G260_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G260_ECTSI)

HSP 1 Score: 414 bits (1065), Expect = 1.840e-141
Identity = 225/336 (66.96%), Postives = 272/336 (80.95%), Query Frame = 0
Query:    1 MTTMRRTRPTTALW--GAATLLAGT---RLASGATILITSPDSSSAYRAGDAVPVEWDYEGTGENFSINLLKGGEQLDNGDLCAAEENGVCFDLTQDQMVLLPDTGLESGTDYTIHVKDQSSDAEHESPAFTILGTPDANVEVTTPNGFTSLNQGGEVSVSWLYVGANQLFDIYVRQNGKRVSDNLCAGQSEGSCKSTGPVASATVTLPVELENSGDYRLLVVDKVDDDAWGLSAELPVGVAASSTEGSDSESSSASKLGLVIGLAAGGVCLLAALLACLRKRNKDHRREQKMATLDMLNKRRPAPSVSLAVEGMAEPNSPDQVSVAVIHYLAGFV 331
            M   +RTRP TA     AA  +AG    R+A GAT+ I+SP S+S+Y AGDAVPVEW YEGTGENF+I+LLKG E++   DLC AEENGVCFDLTQ+Q V+LPDT LESG+DYT+ V+DQSSD E  S  FTI+GT  +NVE+T+P+G+T+LN GG++SVSWLYVG N  FDIY+RQ+G+RVS+NLCA Q  GSC +T PVASAT+TLP E+EN  DYRLLVVDKV+DDAWGLS ELPVGVAA+S + + S+SS+A+KL LVIGL+AGGVCLLA LLA  R +NK+ RRE+K+ATLDMLNKRRPAPSVSLAVEGMAEP+SPDQ S  V  +L  F+
Sbjct:    1 MVITKRTRPPTAFGRAAAAIFVAGASTARVALGATLDISSPASTSSYHAGDAVPVEWIYEGTGENFAIHLLKGDEEV--ADLCFAEENGVCFDLTQEQTVILPDTDLESGSDYTVRVRDQSSDLEDTSETFTIIGTSTSNVEITSPDGYTTLNAGGDLSVSWLYVGENTEFDIYLRQDGERVSNNLCADQEGGSCTATIPVASATITLPEEIENGADYRLLVVDKVNDDAWGLSVELPVGVAAASVD-TGSDSSAATKLALVIGLSAGGVCLLAVLLAGFRTKNKNRRREEKLATLDMLNKRRPAPSVSLAVEGMAEPDSPDQTSGGVSGWLGRFM 333          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig582.14258.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6J4_9PHAE2.250e-14270.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G260_ECTSI1.840e-14166.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 254..275
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 276..357
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..253
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.687
NoneNo IPR availableTMHMMTMhelixcoord: 256..275
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig582contigL-elsbetiae_contig582:28769..32475 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig582.14258.1mRNA_L-elsbetiae_contig582.14258.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig582 28521..33038 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig582.14258.1 ID=prot_L-elsbetiae_contig582.14258.1|Name=mRNA_L-elsbetiae_contig582.14258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=358bp
MTTMRRTRPTTALWGAATLLAGTRLASGATILITSPDSSSAYRAGDAVPV
EWDYEGTGENFSINLLKGGEQLDNGDLCAAEENGVCFDLTQDQMVLLPDT
GLESGTDYTIHVKDQSSDAEHESPAFTILGTPDANVEVTTPNGFTSLNQG
GEVSVSWLYVGANQLFDIYVRQNGKRVSDNLCAGQSEGSCKSTGPVASAT
VTLPVELENSGDYRLLVVDKVDDDAWGLSAELPVGVAASSTEGSDSESSS
ASKLGLVIGLAAGGVCLLAALLACLRKRNKDHRREQKMATLDMLNKRRPA
PSVSLAVEGMAEPNSPDQVSVAVIHYLAGFVFVCPHTSPQTCVSFGRPIA
GINPLMS*
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