prot_L-elsbetiae_contig5719.14106.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5719.14106.1
Unique Nameprot_L-elsbetiae_contig5719.14106.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length518
Homology
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BLAST of mRNA_L-elsbetiae_contig5719.14106.1 vs. uniprot
Match: D7G0A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0A1_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 3.570e-101
Identity = 259/400 (64.75%), Postives = 282/400 (70.50%), Query Frame = 0 
Query:  105 AKNTCAVCEKEARSPFTLERCGHALCPACVI--AISPMCPAGACDEPVSVRDLALILTESKWAELQEKRVEVFRARAGKGSRCPTCQAWVEAGS---PGQ--------------GTASQRSKRLLSSPPLVCNQGHCLCQFCGAKLKKQAPSC-GCGGAKLLAFSGLLSLLEELLAEPASVALCGPVGKLPKQKAPTAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------GGYSHMGGXXXXSMWEAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAERAQAVAAEAEGRADKAMVCVFDALAACLPARGDLPDHLPELLALVRESSLLQLVCSYLRNDSLMDIAKRRGLYQSLFNLILGFALHELLAPLIDHVPPKGGGS 470
            A+N C+ C KE R+PF LERCGH LCP C++  A +  CP   C +PVSVRDLALIL E+ W +LQ KRV  FRARA KG+RCP CQ+WVE GS   P Q              GTA  R K LLS  PLVCNQGH LC+FC A+L K++P C  CG AKLL  SGLLSLLEEL+A PASV LCGPVG LPK  A  AA  XXXXXXXXXXXXXXXXXXXXXXXXXXXX               G+  +GG   X       XXXXXXXXXX    XXXXXXXXXXXXXXXXXX          EAEGRADKAMV +FDAL  CLPA GD P+HLPELLALVRESSLLQ VC+YLRNDSLMDIAKRR LYQSLF L+LGFA HELLAPLIDHVPPK GG+
Sbjct:  120 AQNACSSCSKEVRNPFPLERCGHTLCPGCLLTRASASECPVDGCGKPVSVRDLALILDENAWVDLQVKRVAAFRARARKGARCPKCQSWVEGGSTSAPSQRKQGGDVVEVGKVGGTAKDRVKVLLSGQPLVCNQGHLLCRFCAAELSKKSPRCVACGDAKLLPVSGLLSLLEELVANPASVELCGPVGPLPKTFATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAALMAGFGELGGFGQXXXXXXXXXXXXXXXXXXISSKXXXXXXXXXXXXXXXXXXXXXXXX----EAEGRADKAMVVIFDALTGCLPATGDSPEHLPELLALVRESSLLQTVCAYLRNDSLMDIAKRRKLYQSLFKLVLGFAQHELLAPLIDHVPPKSGGA 515
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BLAST of mRNA_L-elsbetiae_contig5719.14106.1 vs. uniprot
Match: UPI0018851A84 (LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018851A84)

HSP 1 Score: 58.5 bits (140), Expect = 3.210e-5
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 0 
Query:  399 GDLPDHLPELLA-LVRESSLLQLVCSYLRNDSLMDIAKRRGLYQSLFNLILGFALHELLAPLIDHVPP 465
            G+  D LPE LA  +RES++L  VCSYLRNDS++D+A+   LY ++  L+  F     LAPL+  V P
Sbjct: 3121 GEQADLLPEGLAERIRESNILTAVCSYLRNDSVLDMARHVPLYGAVLRLLRAFTASRQLAPLLAQVAP 3188
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5719.14106.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0A1_ECTSI3.570e-10164.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0018851A843.210e-547.06LOW QUALITY PROTEIN: baculoviral IAP repeat-contai... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 125..134
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 109..142
score: 9.863
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 107..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5719contigL-elsbetiae_contig5719:488..2408 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5719.14106.1mRNA_L-elsbetiae_contig5719.14106.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5719 407..2470 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5719.14106.1 ID=prot_L-elsbetiae_contig5719.14106.1|Name=mRNA_L-elsbetiae_contig5719.14106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=518bp
MDVVDLADSDDDVAVPAVQVHKKVDPGDDLAVITAAPAQQPSSGGRSARR
KSGGAGGAGGAGSMGRGVASTNSPKRNKKAKRDGSSSAAVVLDVEDCDGG
GGGGAKNTCAVCEKEARSPFTLERCGHALCPACVIAISPMCPAGACDEPV
SVRDLALILTESKWAELQEKRVEVFRARAGKGSRCPTCQAWVEAGSPGQG
TASQRSKRLLSSPPLVCNQGHCLCQFCGAKLKKQAPSCGCGGAKLLAFSG
LLSLLEELLAEPASVALCGPVGKLPKQKAPTAAAAAAAAAVSSAFAYGGG
RGGGRGGGRGRGRGGYSHMGGRGGGSMWEAPANGFGGYGEYGGPEKISSK
WSKGTGYGGSGDAAAAERAQAVAAEAEGRADKAMVCVFDALAACLPARGD
LPDHLPELLALVRESSLLQLVCSYLRNDSLMDIAKRRGLYQSLFNLILGF
ALHELLAPLIDHVPPKGGGSGKARSNAGGGGAAAAAAAAARRLAATAATM
LVARGKARAGARRTTTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR001841Znf_RING