mRNA_L-elsbetiae_contig5719.14106.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5719.14106.1
Unique NamemRNA_L-elsbetiae_contig5719.14106.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5719.14106.1 vs. uniprot
Match: D7G0A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0A1_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 1.510e-100
Identity = 259/400 (64.75%), Postives = 282/400 (70.50%), Query Frame = 3 
Query:  375 AKNTCAVCEKEARSPFTLERCGHALCPACVI--AISPMCPAGACDEPVSVRDLALILTESKWAELQEKRVEVFRARAGKGSRCPTCQAWVEAGS---PGQ--------------GTASQRSKRLLSSPPLVCNQGHCLCQFCGAKLKKQAPSC-GCGGAKLLAFSGLLSLLEELLAEPASVALCGPVGKLPKQKAPTAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------GGYSHMGGXXXXSMWEAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAERAQAVAAEAEGRADKAMVCVFDALAACLPARGDLPDHLPELLALVRESSLLQLVCSYLRNDSLMDIAKRRGLYQSLFNLILGFALHELLAPLIDHVPPKGGGS 1472
            A+N C+ C KE R+PF LERCGH LCP C++  A +  CP   C +PVSVRDLALIL E+ W +LQ KRV  FRARA KG+RCP CQ+WVE GS   P Q              GTA  R K LLS  PLVCNQGH LC+FC A+L K++P C  CG AKLL  SGLLSLLEEL+A PASV LCGPVG LPK  A  AA  XXXXXXXXXXXXXXXXXXXXXXXXXXXX               G+  +GG   X       XXXXXXXXXX    XXXXXXXXXXXXXXXXXX          EAEGRADKAMV +FDAL  CLPA GD P+HLPELLALVRESSLLQ VC+YLRNDSLMDIAKRR LYQSLF L+LGFA HELLAPLIDHVPPK GG+
Sbjct:  120 AQNACSSCSKEVRNPFPLERCGHTLCPGCLLTRASASECPVDGCGKPVSVRDLALILDENAWVDLQVKRVAAFRARARKGARCPKCQSWVEGGSTSAPSQRKQGGDVVEVGKVGGTAKDRVKVLLSGQPLVCNQGHLLCRFCAAELSKKSPRCVACGDAKLLPVSGLLSLLEELVANPASVELCGPVGPLPKTFATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAALMAGFGELGGFGQXXXXXXXXXXXXXXXXXXISSKXXXXXXXXXXXXXXXXXXXXXXXX----EAEGRADKAMVVIFDALTGCLPATGDSPEHLPELLALVRESSLLQTVCAYLRNDSLMDIAKRRKLYQSLFKLVLGFAQHELLAPLIDHVPPKSGGA 515
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BLAST of mRNA_L-elsbetiae_contig5719.14106.1 vs. uniprot
Match: UPI0018851A84 (LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018851A84)

HSP 1 Score: 58.5 bits (140), Expect = 3.750e-5
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 3 
Query: 1257 GDLPDHLPELLA-LVRESSLLQLVCSYLRNDSLMDIAKRRGLYQSLFNLILGFALHELLAPLIDHVPP 1457
            G+  D LPE LA  +RES++L  VCSYLRNDS++D+A+   LY ++  L+  F     LAPL+  V P
Sbjct: 3121 GEQADLLPEGLAERIRESNILTAVCSYLRNDSVLDMARHVPLYGAVLRLLRAFTASRQLAPLLAQVAP 3188
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5719.14106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0A1_ECTSI1.510e-10064.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0018851A843.750e-547.06LOW QUALITY PROTEIN: baculoviral IAP repeat-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5719contigL-elsbetiae_contig5719:407..2470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.3
Seed ortholog evalue3.1e-90
Seed eggNOG ortholog2880.D7G0A1
KEGG koko:K03178,ko:K10586,ko:K10699
KEGG Pathwayko04120,ko04214,ko04215,ko05012,map04120,map04214,map04215,map05012
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759
EC2.3.2.23,6.2.1.45
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-14_005080.1
Exons2
Model size1697
Cds size1554
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5719.14106.1prot_L-elsbetiae_contig5719.14106.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5719 488..2408 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816610.9941397-UTR-L-elsbetiae_contig5719:406..4871622816610.9941397-UTR-L-elsbetiae_contig5719:406..487Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5719 407..487 -
1691683683.4504042-UTR-L-elsbetiae_contig5719:406..4871691683683.4504042-UTR-L-elsbetiae_contig5719:406..487Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5719 407..487 -
1622816611.0343792-UTR-L-elsbetiae_contig5719:2408..24701622816611.0343792-UTR-L-elsbetiae_contig5719:2408..2470Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5719 2409..2470 -
1691683683.492012-UTR-L-elsbetiae_contig5719:2408..24701691683683.492012-UTR-L-elsbetiae_contig5719:2408..2470Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5719 2409..2470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.0091681-CDS-L-elsbetiae_contig5719:487..7181622816611.0091681-CDS-L-elsbetiae_contig5719:487..718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5719 488..718 -
1691683683.468885-CDS-L-elsbetiae_contig5719:487..7181691683683.468885-CDS-L-elsbetiae_contig5719:487..718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5719 488..718 -
1622816611.0238705-CDS-L-elsbetiae_contig5719:1085..24081622816611.0238705-CDS-L-elsbetiae_contig5719:1085..2408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5719 1086..2408 -
1691683683.4780428-CDS-L-elsbetiae_contig5719:1085..24081691683683.4780428-CDS-L-elsbetiae_contig5719:1085..2408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5719 1086..2408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5719.14106.1

>prot_L-elsbetiae_contig5719.14106.1 ID=prot_L-elsbetiae_contig5719.14106.1|Name=mRNA_L-elsbetiae_contig5719.14106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=518bp
MDVVDLADSDDDVAVPAVQVHKKVDPGDDLAVITAAPAQQPSSGGRSARR
KSGGAGGAGGAGSMGRGVASTNSPKRNKKAKRDGSSSAAVVLDVEDCDGG
GGGGAKNTCAVCEKEARSPFTLERCGHALCPACVIAISPMCPAGACDEPV
SVRDLALILTESKWAELQEKRVEVFRARAGKGSRCPTCQAWVEAGSPGQG
TASQRSKRLLSSPPLVCNQGHCLCQFCGAKLKKQAPSCGCGGAKLLAFSG
LLSLLEELLAEPASVALCGPVGKLPKQKAPTAAAAAAAAAVSSAFAYGGG
RGGGRGGGRGRGRGGYSHMGGRGGGSMWEAPANGFGGYGEYGGPEKISSK
WSKGTGYGGSGDAAAAERAQAVAAEAEGRADKAMVCVFDALAACLPARGD
LPDHLPELLALVRESSLLQLVCSYLRNDSLMDIAKRRGLYQSLFNLILGF
ALHELLAPLIDHVPPKGGGSGKARSNAGGGGAAAAAAAAARRLAATAATM
LVARGKARAGARRTTTS*
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mRNA from alignment at L-elsbetiae_contig5719:407..2470-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5719.14106.1 ID=mRNA_L-elsbetiae_contig5719.14106.1|Name=mRNA_L-elsbetiae_contig5719.14106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2064bp|location=Sequence derived from alignment at L-elsbetiae_contig5719:407..2470- (Laminarionema elsbetiae ELsaHSoW15)
CCTGAGTCTATAGGGAACACGTGCGCAAGCCCGAAGGAAGACCGAAATAC
ATACCTGAAGTCATGGATGTCGTTGACCTTGCGGACTCGGACGACGATGT
GGCGGTGCCCGCGGTCCAAGTTCACAAGAAAGTTGACCCTGGTGATGACC
TCGCTGTGATCACAGCAGCTCCCGCCCAGCAGCCATCATCCGGCGGGAGG
TCTGCTAGGAGGAAGAGCGGTGGTGCTGGTGGTGCCGGTGGTGCCGGATC
CATGGGTCGTGGGGTCGCATCGACGAACTCGCCCAAACGCAACAAAAAGG
CGAAGCGCGACGGCTCTTCATCAGCAGCAGTGGTACTAGATGTCGAAGAT
TGCGATGGCGGCGGCGGCGGCGGCGCGAAGAACACGTGCGCTGTGTGCGA
GAAGGAAGCCCGGAGTCCCTTCACCCTCGAGCGGTGCGGGCACGCGCTTT
GTCCTGCTTGTGTGATCGCAATCTCGCCCATGTGTCCGGCCGGCGCCTGC
GACGAGCCCGTCTCCGTGCGGGACCTGGCCCTGATTCTCACGGAGAGCAA
GTGGGCCGAGCTCCAGGAGAAGAGGGTCGAGGTCTTTCGCGCCCGCGCCG
GGAAGGGCAGCCGTTGCCCTACGTGCCAGGCCTGGGTGGAGGCCGGGAGT
CCCGGGCAGGGCACGGCGAGCCAGCGGTCGAAGAGGCTGCTCTCCAGCCC
GCCGCTCGTCTGCAACCAGGGGCATTGCCTCTGCCAGTTCTGCGGCGCCA
AGCTGAAGAAGCAGGCGCCCTCCTGCGGCTGCGGCGGCGCCAAGCTCCTT
GCCTTCAGCGGGCTCCTATCTCTGCTGGAGGAGCTCCTCGCGGAGCCAGC
GTCGGTGGCGCTCTGCGGGCCCGTCGGCAAGCTCCCGAAGCAGAAGGCCC
CCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTTTCCTCCGCCTTCGCC
TATGGCGGCGGCAGGGGCGGCGGCAGGGGCGGAGGCAGAGGGAGAGGCCG
GGGCGGGTACTCCCACATGGGCGGTCGGGGCGGCGGCAGCATGTGGGAGG
CGCCCGCGAATGGCTTCGGCGGGTACGGTGAATACGGAGGGCCGGAGAAA
ATCAGCTCGAAGTGGTCCAAGGGGACGGGCTACGGCGGGAGCGGGGACGC
TGCCGCGGCCGAGAGGGCGCAGGCTGTAGCCGCGGAGGCGGAGGGGAGGG
CGGACAAGGCGATGGTGTGTGTGTTCGACGCCCTGGCGGCGTGCTTGCCG
GCGAGGGGGGACCTCCCCGACCACCTGCCGGAGCTCCTGGCGCTCGTGCG
CGAGTCGTCGCTGCTGCAGCTCGTGTGCTCGTACCTTCGCAACGACAGCC
TCATGGACATCGCCAAGCGCCGAGGGCTCTACCAGGTTCGCTGAATAGTA
GGTTCCCGTTTTGTGTCTCTGCTTTGTGTGCGTGCAGCTCGTTGTTGCTT
GCGCTTCGCGGGGGGGGGGTGGCTGGGATGAGATGGGCACCACAAGGGGC
CATCTCCGTACGTGAGACACATGCACCTTCCAGAATTGGCGTCGGAAGGT
GACGGTCTCTTGTGTCATGTTCCGCTAGTCTCTAGTCGCCCTGTCGTCCC
GCAGCCTGGCACGGGGGGCGTGGCGCGTGCTTTACGTTGCAGCTTGGCTT
CCGGGACTCTCGCTCGCTGCCTTGCTTGCCGGCTCACTGCCGGGACTATC
TACGCCCCGCCCGCTCCCTCCCTTCTCTATTCGTCGCTCCTGGTGCCGAC
AGAGCCTCTTCAACCTGATCCTCGGCTTCGCCCTGCATGAGCTCCTTGCT
CCGCTGATCGACCATGTGCCTCCGAAGGGCGGTGGCAGCGGCAAGGCGCG
AAGCAACGCTGGCGGCGGTGGGGCGGCGGCGGCGGCGGCGGCGGCGGCAA
GACGCCTGGCGGCAACGGCAGCGACGATGTTAGTGGCAAGGGGAAAGGCA
AGGGCAGGGGCGCGCAGGACGACGACGAGTTAGCGGTGGTGGGGGTGAGC
GGCGGCGGCGGCAGCGGCGGCGGCGGCGGAGGCGCGGAGGACGACGCCGA
AGAGGAGGACGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5719:407..2470-

>mRNA_L-elsbetiae_contig5719.14106.1 ID=mRNA_L-elsbetiae_contig5719.14106.1|Name=mRNA_L-elsbetiae_contig5719.14106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3108bp|location=Sequence derived from alignment at L-elsbetiae_contig5719:407..2470- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGTCGTTGACCTTGCGGACTCGGACGACGATGTGGCGGTGCCCGC
GGTCCAAGTTCACAAGAAAGTTGACCCTGGTGATGACCTCGCTGTGATCA
CAGCAGCTCCCGCCCAGCAGCCATCATCCGGCGGGAGGTCTGCTAGGAGG
AAGAGCGGTGGTGCTGGTGGTGCCGGTGGTGCCGGATCCATGGGTCGTGG
GGTCGCATCGACGAACTCGCCCAAACGCAACAAAAAGGCGAAGCGCGACG
GCTCTTCATCAGCAGCAGTGGTACTAGATGTCGAAGATTGCGATGGCGGC
GGCGGCGGCGGCGCGAAGAACACGTGCGCTGTGTGCGAGAAGGAAGCCCG
GAGTCCCTTCACCCTCGAGCGGTGCGGGCACGCGCTTTGTCCTGCTTGTG
TGATCGCAATCTCGCCCATGTGTCCGGCCGGCGCCTGCGACGAGCCCGTC
TCCGTGCGGGACCTGGCCCTGATTCTCACGGAGAGCAAGTGGGCCGAGCT
CCAGGAGAAGAGGGTCGAGGTCTTTCGCGCCCGCGCCGGGAAGGGCAGCC
GTTGCCCTACGTGCCAGGCCTGGGTGGAGGCCGGGAGTCCCGGGCAGGGC
ACGGCGAGCCAGCGGTCGAAGAGGCTGCTCTCCAGCCCGCCGCTCGTCTG
CAACCAGGGGCATTGCCTCTGCCAGTTCTGCGGCGCCAAGCTGAAGAAGC
AGGCGCCCTCCTGCGGCTGCGGCGGCGCCAAGCTCCTTGCCTTCAGCGGG
CTCCTATCTCTGCTGGAGGAGCTCCTCGCGGAGCCAGCGTCGGTGGCGCT
CTGCGGGCCCGTCGGCAAGCTCCCGAAGCAGAAGGCCCCCACCGCCGCCG
CCGCCGCCGCCGCCGCCGCCGTTTCCTCCGCCTTCGCCTATGGCGGCGGC
AGGGGCGGCGGCAGGGGCGGAGGCAGAGGGAGAGGCCGGGGCGGGTACTC
CCACATGGGCGGTCGGGGCGGCGGCAGCATGTGGGAGGCGCCCGCGAATG
GCTTCGGCGGGTACGGTGAATACGGAGGGCCGGAGAAAATCAGCTCGAAG
TGGTCCAAGGGGACGGGCTACGGCGGGAGCGGGGACGCTGCCGCGGCCGA
GAGGGCGCAGGCTGTAGCCGCGGAGGCGGAGGGGAGGGCGGACAAGGCGA
TGGTGTGTGTGTTCGACGCCCTGGCGGCGTGCTTGCCGGCGAGGGGGGAC
CTCCCCGACCACCTGCCGGAGCTCCTGGCGCTCGTGCGCGAGTCGTCGCT
GCTGCAGCTCGTGTGCTCGTACCTTCGCAACGACAGCCTCATGGACATCG
CCAAGCGCCGAGGGCTCTACCAGATGGATGTCGTTGACCTTGCGGACTCG
GACGACGATGTGGCGGTGCCCGCGGTCCAAGTTCACAAGAAAGTTGACCC
TGGTGATGACCTCGCTGTGATCACAGCAGCTCCCGCCCAGCAGCCATCAT
CCGGCGGGAGGTCTGCTAGGAGGAAGAGCGGTGGTGCTGGTGGTGCCGGT
GGTGCCGGATCCATGGGTCGTGGGGTCGCATCGACGAACTCGCCCAAACG
CAACAAAAAGGCGAAGCGCGACGGCTCTTCATCAGCAGCAGTGGTACTAG
ATGTCGAAGATTGCGATGGCGGCGGCGGCGGCGGCGCGAAGAACACGTGC
GCTGTGTGCGAGAAGGAAGCCCGGAGTCCCTTCACCCTCGAGCGGTGCGG
GCACGCGCTTTGTCCTGCTTGTGTGATCGCAATCTCGCCCATGTGTCCGG
CCGGCGCCTGCGACGAGCCCGTCTCCGTGCGGGACCTGGCCCTGATTCTC
ACGGAGAGCAAGTGGGCCGAGCTCCAGGAGAAGAGGGTCGAGGTCTTTCG
CGCCCGCGCCGGGAAGGGCAGCCGTTGCCCTACGTGCCAGGCCTGGGTGG
AGGCCGGGAGTCCCGGGCAGGGCACGGCGAGCCAGCGGTCGAAGAGGCTG
CTCTCCAGCCCGCCGCTCGTCTGCAACCAGGGGCATTGCCTCTGCCAGTT
CTGCGGCGCCAAGCTGAAGAAGCAGGCGCCCTCCTGCGGCTGCGGCGGCG
CCAAGCTCCTTGCCTTCAGCGGGCTCCTATCTCTGCTGGAGGAGCTCCTC
GCGGAGCCAGCGTCGGTGGCGCTCTGCGGGCCCGTCGGCAAGCTCCCGAA
GCAGAAGGCCCCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTTTCCT
CCGCCTTCGCCTATGGCGGCGGCAGGGGCGGCGGCAGGGGCGGAGGCAGA
GGGAGAGGCCGGGGCGGGTACTCCCACATGGGCGGTCGGGGCGGCGGCAG
CATGTGGGAGGCGCCCGCGAATGGCTTCGGCGGGTACGGTGAATACGGAG
GGCCGGAGAAAATCAGCTCGAAGTGGTCCAAGGGGACGGGCTACGGCGGG
AGCGGGGACGCTGCCGCGGCCGAGAGGGCGCAGGCTGTAGCCGCGGAGGC
GGAGGGGAGGGCGGACAAGGCGATGGTGTGTGTGTTCGACGCCCTGGCGG
CGTGCTTGCCGGCGAGGGGGGACCTCCCCGACCACCTGCCGGAGCTCCTG
GCGCTCGTGCGCGAGTCGTCGCTGCTGCAGCTCGTGTGCTCGTACCTTCG
CAACGACAGCCTCATGGACATCGCCAAGCGCCGAGGGCTCTACCAGAGCC
TCTTCAACCTGATCCTCGGCTTCGCCCTGCATGAGCTCCTTGCTCCGCTG
ATCGACCATGTGCCTCCGAAGGGCGGTGGCAGCGGCAAGGCGCGAAGCAA
CGCTGGCGGCGGTGGGGCGGCGGCGGCGGCGGCGGCGGCGGCAAGACGCC
TGGCGGCAACGGCAGCGACGATGTTAGTGGCAAGGGGAAAGGCAAGGGCA
GGGGCGCGCAGGACGACGACGAGTTAGAGCCTCTTCAACCTGATCCTCGG
CTTCGCCCTGCATGAGCTCCTTGCTCCGCTGATCGACCATGTGCCTCCGA
AGGGCGGTGGCAGCGGCAAGGCGCGAAGCAACGCTGGCGGCGGTGGGGCG
GCGGCGGCGGCGGCGGCGGCGGCAAGACGCCTGGCGGCAACGGCAGCGAC
GATGTTAGTGGCAAGGGGAAAGGCAAGGGCAGGGGCGCGCAGGACGACGA
CGAGTTAG
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