prot_L-elsbetiae_contig555.13851.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig555.13851.1
Unique Nameprot_L-elsbetiae_contig555.13851.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length1121
Homology
BLAST of mRNA_L-elsbetiae_contig555.13851.1 vs. uniprot
Match: A0A6H5JBS4_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JBS4_9PHAE)

HSP 1 Score: 649 bits (1674), Expect = 1.280e-206
Identity = 571/1185 (48.19%), Postives = 645/1185 (54.43%), Query Frame = 0
Query:    4 PMAGRSPQGQGPQRSPTVGPVNXXXXXXXXXXXXXXXXXXXXXGPMPREGNGGGMPRPEPGRQDGHGHTRLPGIGDGAQGPRAGLEGPNTRPGLGPGRGXXXXXXQGADARQGFDNRPEMGMDARGRPDAPGVPQAGRGSNAHPAAAGPREGFGGRQQPPQDTRSANVSNVSNVNRSVFDRLGAPPR---GEIQQRLGARRAPDAQRQHAAAPPAQQRGAEQHGPLSDVRPIPAMAXXXXXXXXXXPGPNTRXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGGMVMGNTHTQGGGRGEGQESWSDQ----RPA----DMHRPGREQLGGAGRRSPAGTGVDFNGGDAGHGRPPAA-REHPRGEGGHGDQRGGSRPEYVPDGVGRNLP-PQDGPAQ-GWAGQQGRSGPDNQPNRQMQGQ---------GRYPQSVAQQHTGARVSPQGPAVRSGAGP-TELAGHLHRGEQERGV-SEFSRAAGGSGRPQQAMGGEGHVRNQPQXXXXXXXXXXXXX-------FQQQSVGAGRGADRGQQARGAAPPHTGGGSLAWGGFGVVK----------------QEAPRDHSAGQATRSFGSDRGTAGPS-GPNAGQPNLG---FSSQQWG------QGGDDRGLRPKAPEWEGSDQGQPHHERHGIVTEESRWGAPKP-AVRATVRCTGVPADVGPVELSQHFMVFGKIVDMRLKTTLVAEGGGKGQKEAFIQFASARQAQACVSSPKAVLGNRFIVVELSEANLVDTAPHTRSHSHYQDAGEAAXXXXXXXXXXXXXXXXXXXX-------KKEHEKIIARASKTREVVAQQRVLVELEERLKASAASIAAAKAKRDKVQVFLKMMQEKGKPEADQAKYRTMLNTLSAKVLVLEAASHTGELQAQKRKMSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGEPRVARSLDNRPTTVKVSGLPASAGEGDLRVHANMAGVVVAAAMLGRPGEGVVKFAERWAAEMFMSKRRSFGGVPLTMSWYTGRFPGSDLAPSHQPTRQSEQEWSGSTEMAQSRGQHKSTPIINADDEGDSIELRLAPVQQDSQAMGPRGGG--WGDDFGKEEGVGAWSSAGWGKXXXXXXXXXXXXXXXXAGSSPLRLPSVEAGDDDDELYQDMAS 1120
            PMA R    QGPQRSP +GPVN                     GP+  EGNG GM RP P  QDG               P   ++GP  R                 +ARQ FD RP + M  R  PDA G  + GRG N+ PA    RE   GRQ+ P D  +AN S      RSVFDRLGAPP    GE  Q   A   PDA+RQ        + G  +H             XXXXXXXXXX GP+ R                                     H   G R  GQ++WS      RP     D+ RPG EQ GGAG++SP G G D N    G G PP   REHP GE G   QR G RPEY P+G GR +P P    AQ GWA QQGR+G D+   ++             G +PQ++AQ + GARV PQG   R G GP  + +G++HRGE+ RG+ SEFSR   G+GRP ++   +G VR QPQ XXXXXXXX           FQQ + GA RGA +G+QA                                      +EA R        R FG DRG  G S GP AGQP      FSSQ         +G D   LR +APEW G +Q               RW  PK  A R TVRC+ VPADVGPVELSQHF  FGKIVDMRL+   VA  GG G+KEA IQFAS+RQAQACVSSPKAVLGNRFIVV+LSE NLVD  PH +      DA  AA  XXXXXXXXXXXXXXXXXX       KK ++K+IA+ASKTREVVAQQRV+V L+E +KA+A  IA  KAKR+KVQ FLKMMQEKGKPE +QA+YR ML+TLSAKVLVLEAAS   EL+AQ+R  +  XXXXXXXXXXX                                                 E RV RSLDNRPTTVKVSGLP SAGEGDLRVHANMAGVVVAAAML RPGEGVVKFAERWAAEMFMSK +SFGG+PLTMSWYTG FPGS  A S QP R+  Q   G     Q+       P+I+ D  GDSIEL+LAPVQQ     GPRGGG  WGDDFGKEEGVG W    WGK                 GSSPL LPSVEAGDDDDELYQDM S
Sbjct:  546 PMADRP--AQGPQRSPVLGPVNGPRAF----------------GPVALEGNGAGMARPGP--QDGR--------------PLGRIDGPPPR----------------LEARQEFDIRPVVNMPHR--PDAHGTSEMGRGPNSQPAPD-LREQLSGRQRTPPDNPNANASK----GRSVFDRLGAPPSSAGGEQVQHTSALHGPDARRQQQHPG---EGGGMRHAXXXXXXXXXXXXXXXXXXXXXXXGPDARQGAGGMRRSPTNNQVGLQERSRQDMQRGPNFPEGEGMHNTQGRRVGGQDAWSGVGSGGRPGPGAVDLQRPGMEQHGGAGQKSPQGMGPDLNRAGGGRGMPPVTNREHPGGEVGREGQRSGGRPEYPPEGPGRQMPRPDASNAQHGWARQQGRAGLDSSHGQRQXXXXXXXXXXXXGHHPQALAQ-NAGARVPPQGVMGRPGGGPMVQPSGNIHRGEEGRGMGSEFSRGGDGNGRPHRSSEHDGPVRGQPQAXXXXXXXXQQQQHHHFDASFQQHNSGAVRGAGQGRQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEHHTREAARLPGEASGERRFGGDRGNVGSSSGPRAGQPGFSQDRFSSQXXXXXXXXXRGSDGGTLRAEAPEWRGPEQ-------------PPRWATPKQSAPRTTVRCSRVPADVGPVELSQHFAEFGKIVDMRLRVA-VAGDGGNGEKEALIQFASSRQAQACVSSPKAVLGNRFIVVDLSETNLVDVDPHYQDPEETVDAARAAATXXXXXXXXXXXXXXXXXXXXXXXARKKANDKMIAQASKTREVVAQQRVVVLLQEGVKAAAVPIATTKAKRNKVQGFLKMMQEKGKPETEQARYRGMLDTLSAKVLVLEAASPAAELEAQQRGAAVAXXXXXXXXXXX-------------------------------------------------EGRVPRSLDNRPTTVKVSGLPDSAGEGDLRVHANMAGVVVAAAMLDRPGEGVVKFAERWAAEMFMSKSKSFGGIPLTMSWYTGPFPGSAPA-SSQPPRRPHQ---GPETFQQA------APVIS-DVSGDSIELKLAPVQQGLGMGGPRGGGGGWGDDFGKEEGVG-WRGDVWGKRKNNGGSGNGS-----VGSSPLHLPSVEAGDDDDELYQDMGS 1589          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig555.13851.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBS4_9PHAE1.280e-20648.19RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 768..788
NoneNo IPR availableCOILSCoilCoilcoord: 828..855
NoneNo IPR availablePANTHERPTHR14398RNA RECOGNITION RRM/RNP DOMAINcoord: 326..1021
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 623..698
e-value: 1.2E-7
score: 41.4
coord: 919..984
e-value: 0.1
score: 15.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 625..694
e-value: 7.9E-6
score: 25.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 622..702
score: 9.78
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 608..715
e-value: 2.1E-9
score: 39.1
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 623..986

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig555contigL-elsbetiae_contig555:6109..12824 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig555.13851.1mRNA_L-elsbetiae_contig555.13851.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig555 3933..12836 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig555.13851.1 ID=prot_L-elsbetiae_contig555.13851.1|Name=mRNA_L-elsbetiae_contig555.13851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1121bp
MDDPMAGRSPQGQGPQRSPTVGPVNGSGPRVFGPSASASAPPVGPRGPMP
REGNGGGMPRPEPGRQDGHGHTRLPGIGDGAQGPRAGLEGPNTRPGLGPG
RGMGVGMQQGADARQGFDNRPEMGMDARGRPDAPGVPQAGRGSNAHPAAA
GPREGFGGRQQPPQDTRSANVSNVSNVNRSVFDRLGAPPRGEIQQRLGAR
RAPDAQRQHAAAPPAQQRGAEQHGPLSDVRPIPAMAMQGQGQGQGQPGPN
TRPGPEVRRSPTDNQGGPQRGQGMQRGPNVSGGMVMGNTHTQGGGRGEGQ
ESWSDQRPADMHRPGREQLGGAGRRSPAGTGVDFNGGDAGHGRPPAAREH
PRGEGGHGDQRGGSRPEYVPDGVGRNLPPQDGPAQGWAGQQGRSGPDNQP
NRQMQGQGRYPQSVAQQHTGARVSPQGPAVRSGAGPTELAGHLHRGEQER
GVSEFSRAAGGSGRPQQAMGGEGHVRNQPQQQQQQQQQEVSSSFQQQSVG
AGRGADRGQQARGAAPPHTGGGSLAWGGFGVVKQEAPRDHSAGQATRSFG
SDRGTAGPSGPNAGQPNLGFSSQQWGQGGDDRGLRPKAPEWEGSDQGQPH
HERHGIVTEESRWGAPKPAVRATVRCTGVPADVGPVELSQHFMVFGKIVD
MRLKTTLVAEGGGKGQKEAFIQFASARQAQACVSSPKAVLGNRFIVVELS
EANLVDTAPHTRSHSHYQDAGEAAAAAEAAAAAKAAAAAAQAARKKEHEK
IIARASKTREVVAQQRVLVELEERLKASAASIAAAKAKRDKVQVFLKMMQ
EKGKPEADQAKYRTMLNTLSAKVLVLEAASHTGELQAQKRKMSELEAEAR
AMGATVPPPPNPAVLARLVSGRGGGADASTGRGGRGGGRGRGRGAALGSG
GGRGGEPRVARSLDNRPTTVKVSGLPASAGEGDLRVHANMAGVVVAAAML
GRPGEGVVKFAERWAAEMFMSKRRSFGGVPLTMSWYTGRFPGSDLAPSHQ
PTRQSEQEWSGSTEMAQSRGQHKSTPIINADDEGDSIELRLAPVQQDSQA
MGPRGGGWGDDFGKEEGVGAWSSAGWGKGNRNDGGSGSGNGNGSAGSSPL
RLPSVEAGDDDDELYQDMAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf