prot_L-elsbetiae_contig5537.13830.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5537.13830.1
Unique Nameprot_L-elsbetiae_contig5537.13830.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length298
Homology
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BLAST of mRNA_L-elsbetiae_contig5537.13830.1 vs. uniprot
Match: A0A6H5L0F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F7_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 3.580e-70
Identity = 129/233 (55.36%), Postives = 160/233 (68.67%), Query Frame = 0 
Query:   22 RCTPRLTFWIAAGISWLVWIFAVAAGADDKWMRDESSGEGFLAAAEDGRLNFCDGLDDNEEV----------FEDSCAIYRAFTAMQIIATIACSVSVVLLSLAFFRPSVGVGGCSSPRSLAFVGGALMATYALFQLIAVVLGGTFKQELNSIADE------VGAPGI----------KLGPTFGVAVTGLILAVVVSVLLLLFARHTGDGPLHECCHSLMLANMTEDNGSPA 228
            +CTPRLTFW+ A  SWLVWIFAV+A ADDKW++D   G+ +LAA ED  LN CDGLDD  +           F   C +YRAFTAMQ++ATI CSVSV+LL+LAFFRP  G   C+S R+LAFVGGALMATYALFQL+AVVL     QE +++ ++       G  G           ++GPTFGV VT LILAV+++V+L L A  TGDGPL++CCHSLMLAN +  NG P+
Sbjct:   17 QCTPRLTFWVIAASSWLVWIFAVSAAADDKWIKDNGQGD-WLAAGEDPVLNLCDGLDDAADDDLLATDEYKDFVSICDLYRAFTAMQMLATIVCSVSVLLLALAFFRPEAGK--CASTRTLAFVGGALMATYALFQLVAVVLAAVLAQEFDNLPNDDDTSYLSGYDGFYTFFEAGYEAEVGPTFGVGVTALILAVIMTVVLCLCATRTGDGPLYKCCHSLMLANKS--NGIPS 244
[Close]
BLAST of mRNA_L-elsbetiae_contig5537.13830.1 vs. uniprot
Match: A0A6H5KJK8_9PHAE (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.300e-41
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 0 
Query:   23 CTPRLTFWIAAGISWLVWIFAVAAGADDKWMRDESSGEGF-LAAAEDGRLNFCDGLDDNEEVFEDSCAIYRAFTAMQIIATIACSVSVVLLSLAFFRPSVGVGGCSSPRSLAFVGGALMATYALFQLIAVVLGGTFKQELNSIADE-VGAPGIKLGPTFGVAVTGLILAVVVSVLLLLFARHTGDGPLHECCHSLMLAN 219
            CTPRLTFWI+  + W++W+FAVAA ADDKW + +    GF + A ++  L+ CD  D       D C++Y+AFTAMQ IA +  SVS+VL +LA FRP+ G+  C S +SLA   G+LM  +A F+++A VL    ++EL+   +   G     LG TFG+AV  ++L VV +V +L FAR +GDGP  +C +  M  N
Sbjct:   72 CTPRLTFWISCALGWVIWVFAVAASADDKWAKID----GFDIGAGDEDILDDCDSSD-------DVCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLK-CCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDGEFNTGFGFGEADLGATFGLAVVAVVLGVVQAVSVLTFARSSGDGPFFKCLNECMAMN 258
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5537.13830.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0F7_9PHAE3.580e-7055.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK8_9PHAE1.300e-4144.22WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.140.150coord: 31..214
e-value: 2.1E-5
score: 25.9
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 132..157
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 158..176
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 49..88
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 177..199
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..48
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 200..297
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 89..112
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 113..131
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..26
NoneNo IPR availableTMHMMTMhelixcoord: 178..200
NoneNo IPR availableTMHMMTMhelixcoord: 131..153
NoneNo IPR availableTMHMMTMhelixcoord: 96..118
NoneNo IPR availableTMHMMTMhelixcoord: 27..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5537contigL-elsbetiae_contig5537:8841..11952 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5537.13830.1mRNA_L-elsbetiae_contig5537.13830.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5537 8214..12381 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5537.13830.1 ID=prot_L-elsbetiae_contig5537.13830.1|Name=mRNA_L-elsbetiae_contig5537.13830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp
MISSAALKQQQQRQQPGQQQCRCTPRLTFWIAAGISWLVWIFAVAAGADD
KWMRDESSGEGFLAAAEDGRLNFCDGLDDNEEVFEDSCAIYRAFTAMQII
ATIACSVSVVLLSLAFFRPSVGVGGCSSPRSLAFVGGALMATYALFQLIA
VVLGGTFKQELNSIADEVGAPGIKLGPTFGVAVTGLILAVVVSVLLLLFA
RHTGDGPLHECCHSLMLANMTEDNGSPAILAGPPPGSKPKPGPAAAATAA
AAPHHYEEEGAVPLPQAATAIATEITASEQQQSMSPPPYDQLPPAVG*
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