prot_L-elsbetiae_contig553.13821.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig553.13821.1
Unique Name	prot_L-elsbetiae_contig553.13821.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	756

Homology

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BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot
Match: D7FX15_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX15_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 9.730e-91
Identity = 144/167 (86.23%), Postives = 156/167 (93.41%), Query Frame = 0

Query:   88 GGFIRGADRRSLQNVRVIRRTLVYAIGLSPNFSQVNTLKQPPPFGQYGDITKLVINHHHGVAPDDPRHGSASAYITFRRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQLGLARHGSSFAFKEEVLGNRQDAA 254
            G FIRGADRR+LQN+RV+RR LVYAIGLSPNF+QVNTLKQP  FGQYG+I KLVINHH GV  DDPR+GSASAYITFRR EDAWAA+CSVDGFR+MGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGD++DRFTKDEVQLGLARHGSSFAFKEEVLG+R + A
Sbjct:   58 GVFIRGADRRALQNLRVVRRNLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKDEVQLGLARHGSSFAFKEEVLGDRGNTA 224

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BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot
Match: A0A6H5JE06_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE06_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 5.080e-89
Identity = 147/172 (85.47%), Postives = 158/172 (91.86%), Query Frame = 0

Query:   88 GGFIRGADRRSLQNVRVIRRTLVYAIGLSPNFSQVNTLKQPPPFGQYGDITKLVINHHHGVAPDDPRHGSASAYITFRRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTK---DEVQLGLARHGSSFAFKEEVLGNRQDAADR 256
            G FIRGADRR+LQN+RV+RRTLVYAIGLSPNF+QVNTLKQP  FGQYG+I KLVINHH GV  DDPR+GSASAYITFRR EDAWAA+CSVDGFR+MGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGD++DRFTK   DEVQLGLARHGSSFAFKEEVLG+R D A R
Sbjct:   57 GVFIRGADRRALQNLRVVRRTLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKAGSDEVQLGLARHGSSFAFKEEVLGDRGDTAAR 228

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BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot
Match: A0A836CMF8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF8_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.090e-52
Identity = 87/128 (67.97%), Postives = 100/128 (78.12%), Query Frame = 0

Query:  102 VRVIRRTLVYAIGLSPNFSQVNTLKQPPPFGQYGDITKLVINHHHGVAPDDPRHGSASAYITFRRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEV 229
            +RVI+R LVY IGL P  +       PP FGQYG I K+V+NHHHGV  DDPRHGSASAY+TF   EDAW+AI +VDGF + GR +RASFGTTKYCNSFLR L CNN DCLYLHELGD+ DRFTK+E+
Sbjct:    1 LRVIQRNLVYVIGLGPGIT-AGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127

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BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot
Match: A0A7S4D5P1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P1_HETAK)

HSP 1 Score: 191 bits (485), Expect = 6.640e-49
Identity = 90/154 (58.44%), Postives = 116/154 (75.32%), Query Frame = 0

Query:   95 DRRSLQNVRVIRRTLVYAIGLSPNFSQVNTLKQPPPFGQYGDITKLVINHHHGVAPDDPRHGSASAYITFRRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQLGLARHGSSFAFKEEVLG 248
            D+RSL NVRVI+R LVY IGL  + +    L++   FGQYG I K+V+NH+HG  P DPRHGSASAYITF   +DA +AI +VDG++  GR IRASFGTTKYCN+FLRNLPC NP+CLYLHELGD +DR+T++E+Q G ++  +     + V+G
Sbjct:  107 DKRSLHNVRVIQRNLVYVIGLPLSIASEEDLRRGEFFGQYGRIHKVVVNHNHGAPPKDPRHGSASAYITFCHKDDARSAIQAVDGYQWDGRLIRASFGTTKYCNNFLRNLPCTNPECLYLHELGDSEDRYTREEIQTGASKTDAGPFGTQTVVG 260

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BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot
Match: H3G5S5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5S5_PHYRM)

HSP 1 Score: 165 bits (418), Expect = 5.160e-43
Identity = 81/141 (57.45%), Postives = 100/141 (70.92%), Query Frame = 0

Query:   95 DRRSLQNVRVIRRTLVYAIGLSPNFSQVNTLKQPPPFGQYGDITKLVINHHHGVAPDDPRHGSASAYITFRRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQLGLAR 235
            +R+SLQNVRV++R LVY IGL   F++ + L+    FGQYG I K V+N  H  A  D  + +ASAYITF   EDA   I ++DG+ + G  +RASFGTTKYCN FLRN+ CNNPDCLYLHELGD DD FTK+E+Q G  R
Sbjct:   92 NRKSLQNVRVMQRNLVYVIGLPVRFAEEDILRSNECFGQYGKIVKAVVNKSHLSA--DRANATASAYITFANKEDALCCIVAIDGYYLDGSMLRASFGTTKYCNFFLRNMQCNNPDCLYLHELGDDDDSFTKEEMQSGTRR 230

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BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot
Match: A0A7S2GN38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN38_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.040e-42
Identity = 88/159 (55.35%), Postives = 112/159 (70.44%), Query Frame = 0

Query:   92 RGADRRSLQNVRVIRRTLVYAIGLSPNFSQVNTLKQPPPFGQYGDITKLVINHHHGVAPDDPRHGSAS----AYITFRRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQLGLARHGSSFAFKEEV 246
            R  DR++LQN+RV++R LVY IG+SP+ +   TL++   FGQ+G I K+V+N +H     DPR+ SAS    AYITF   EDA A I +VDGF + GR +RASFGTTKYCNSFLRNL C NPDCLYLHELG+++D FTK+++Q G     S F    EV
Sbjct:  144 RVPDRKNLQNIRVVQRNLVYVIGISPSIASEETLRRGEYFGQFGKIVKVVVNRNHSGGSGDPRNASASLSASAYITFAHKEDAKACIQAVDGFWMDGRNVRASFGTTKYCNSFLRNLSCTNPDCLYLHELGEEEDSFTKEQIQSG---QNSQFKNSTEV 299

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BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot
Match: B8BXU6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXU6_THAPS)

HSP 1 Score: 160 bits (405), Expect = 2.020e-41
Identity = 74/134 (55.22%), Postives = 97/134 (72.39%), Query Frame = 0

Query:   95 DRRSLQNVRVIRRTLVYAIGLSPNFSQVNTLKQPPPFGQYGDITKLVINHHHGVAPDDPRHGSASAYITFRRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDE 228
            DR +L  +RVIRR LVYA+G+ P+ +    L++P  FGQYG I K+VIN +H   P DPR  SASAY+TF   ED  A I ++DGF   GR IRAS+GT+KYC++F++++ CNNPDC YLH +GDQ+D FTK E
Sbjct:   83 DRSTLATMRVIRRNLVYAVGMPPSIATEELLRKPEYFGQYGKIAKIVINRNHN--PGDPRRASASAYVTFVHKEDTLACILALDGFYHDGRNIRASYGTSKYCSAFIKSVKCNNPDCTYLHHMGDQEDTFTKQE 214

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BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot
Match: A0A482RNX1_9ARCH (RRM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNX1_9ARCH)

HSP 1 Score: 159 bits (403), Expect = 2.100e-41
Identity = 72/141 (51.06%), Postives = 104/141 (73.76%), Query Frame = 0

Query:   95 DRRSLQNVRVIRRTLVYAIGLSPNFSQVNTLKQPPPFGQYGDITKLVINHHHGVAPDDPRHGSASAYITFRRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQLGLAR 235
            DR+ L N RV++R LVY  GL  +    +TL++P  FGQYG ++K+++  H   AP    H + SAY+TF   EDA A I +++GF + G  +RASFGTTKYCN+++R+LPC+NPDC+YLHELG+++DRFTK+E+QLG ++
Sbjct:   37 DRKHLHNYRVVQRNLVYVTGLPASCGAEDTLRRPEYFGQYGKVSKVIV--HRNAAPP---HHTVSAYVTFCHKEDARACIQALEGFVVEGHVLRASFGTTKYCNNYIRHLPCSNPDCVYLHELGEEEDRFTKEEIQLGSSK 172

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BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot
Match: K0T133_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T133_THAOC)

HSP 1 Score: 171 bits (434), Expect = 7.750e-41
Identity = 80/163 (49.08%), Postives = 112/163 (68.71%), Query Frame = 0

Query:   95 DRRSLQNVRVIRRTLVYAIGLSPNFSQVNTLKQPPPFGQYGDITKLVINHHHGVAPDDPRHGSASAYITFRRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQLGLARHGSSFAFKEEVLGNRQDAADRG 257
            DR +L ++RVIRR LVYA+GL PN +    L++P  FGQYG I K+V+N +H   P DPR  SASAY+TF   EDA A I ++DGF   GR +RAS+GT+KYC++F++++ CNNPDC YLH +G+++D FTK E+Q G    G     +++ +  +Q AA  G
Sbjct:  195 DRSTLASMRVIRRNLVYAVGLPPNVATEENLRRPEYFGQYGKIAKVVVNRNHN--PGDPRRSSASAYVTFSHKEDALACILALDGFYHDGRNVRASYGTSKYCSAFIKSVRCNNPDCTYLHHMGEKEDTFTKQEIQAGYVTSGRDVLARQKQIMAQQAAAHFG 355

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BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot
Match: G4ZFF6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZFF6_PHYSP)

HSP 1 Score: 171 bits (433), Expect = 1.040e-40
Identity = 85/157 (54.14%), Postives = 110/157 (70.06%), Query Frame = 0

Query:   95 DRRSLQNVRVIRRTLVYAIGLSPNFSQVNTLKQPPPFGQYGDITKLVINHHHGVAPDDPRHGSASAYITFRRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQLGLARHGSSFAFKEEVLGNRQ 251
            +R+SLQNVRV++R LVY IGL  +F++ + L+    FGQYG I K V+N  H  A  D ++ +ASAYITF   EDA   I ++DG+ + G  +RASFGTTKYCN FLRN+ CNNPDCLYLHELGD+DD FTK+E+Q  L  H    AF++  + N Q
Sbjct:   98 NRKSLQNVRVMQRNLVYVIGLPVHFAEEDILRSNECFGQYGKIVKAVVNKSHLSA--DRQNATASAYITFANKEDALCCIVAIDGYYLDGSLLRASFGTTKYCNFFLRNMQCNNPDCLYLHELGDEDDSFTKEEMQSAL--HSGKAAFRDMSMANGQ 250

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig553.13821.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FX15_ECTSI	9.730e-91	86.23	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JE06_9PHAE	5.080e-89	85.47	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A836CMF8_9STRA	1.090e-52	67.97	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A7S4D5P1_HETAK	6.640e-49	58.44	Hypothetical protein (Fragment) n=2 Tax=Heterosigm...	[more]
H3G5S5_PHYRM	5.160e-43	57.45	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A7S2GN38_9STRA	1.040e-42	55.35	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
B8BXU6_THAPS	2.020e-41	55.22	Uncharacterized protein (Fragment) n=1 Tax=Thalass...	[more]
A0A482RNX1_9ARCH	2.100e-41	51.06	RRM domain-containing protein (Fragment) n=1 Tax=a...	[more]
K0T133_THAOC	7.750e-41	49.08	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
G4ZFF6_PHYSP	1.040e-40	54.14	Uncharacterized protein n=1 Tax=Phytophthora sojae...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 620..640
None	No IPR available	PANTHER	PTHR12603:SF0	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4	coord: 96..276
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 109..190 e-value: 5.0E-6 score: 36.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 109..191 e-value: 2.3E-17 score: 64.6
IPR039780	CCR4-NOT transcription complex subunit 4	PANTHER	PTHR12603	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	coord: 96..276
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 108..194 score: 9.695
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 70..201

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig553	contig	L-elsbetiae_contig553:23979..29863 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig553.13821.1	mRNA_L-elsbetiae_contig553.13821.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig553 23648..30840 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig553.13821.1 ID=prot_L-elsbetiae_contig553.13821.1|Name=mRNA_L-elsbetiae_contig553.13821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=756bp
MDLLQRDSCASGSKFAGTLALGDHDVDGEPQADCSSRAGENPPHEQRQQQ
QQHACAHHYHHQQHRRNHQPKHQQQHQDHHQQQQQQQGGFIRGADRRSLQ
NVRVIRRTLVYAIGLSPNFSQVNTLKQPPPFGQYGDITKLVINHHHGVAP
DDPRHGSASAYITFRRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSF
LRNLPCNNPDCLYLHELGDQDDRFTKDEVQLGLARHGSSFAFKEEVLGNR
QDAADRGESAGGGGGSARQQPTNPVFPPPCAMPPASYQREGARPNKEGGA
HHHHNSNNHAMGGNGACDCRGAPSDTGACPGADARWTAAASMGPGSPCGV
GAGGGGDDRPRLRRRRGQRGRRCAAGNGDPSAADGSSGAMGAGGGGPAGV
QEPHGGVFRLPDHALPSSVPSLERCFDLVGGLPNGSLYRPVPEPTPSFGS
GSDRSTASGSSWGNDGCGSPAGTMGSSTPPPLEPLQPGSFSPASAPTSSF
FGGFGGSNGAPPPPPPPREMWNHQSQYHRNLRPSPTSFAGMADAVAQRGF
LDQQKQLQQQHLLQQQQLLQLLQLQRQHEHLFQDPAFRGSAGPQGFTQPH
LDQQHQQHQHYQQHQQYEERGDERATLARLQQQVQQLQRYFETSEGGNGG
GRGSAPLPPSSPPSPPSLGLGFADGRASPASGASCFSDELSLAEDRLAAL
SWGDDGTGDGEGGGATSLFAAGSSPLFGFGSLTQASTACHAEASEWRRAT
PRLST*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003954	RRM_dom_euk
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR039780	Mot2
IPR000504	RRM_dom
IPR035979	RBD_domain_sf