prot_L-elsbetiae_contig5503.13779.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5503.13779.1
Unique Nameprot_L-elsbetiae_contig5503.13779.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length287
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5503.13779.1 vs. uniprot
Match: A0A6H5L7S3_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.070e-14
Identity = 49/101 (48.51%), Postives = 58/101 (57.43%), Query Frame = 0 
Query:  176 RNKRSPQSGSFSVAWGXXXXXXXXXXXXXXXXIT------TPGSTGAESCGTERSFFSTASSEPRYHCLRPGLSSPTWSCAGS----ADGLILPLDVSEAS 266
            R+  SP  GSFS+AW                 +        PG  G +   TERSFFSTASSEPRYHCLR GLSSP WS AGS    ADG ++P+D+S+AS
Sbjct: 1531 RSMTSPPGGSFSIAWSNGGTDAVTPANSTSVDVAGGSGLIAPGVVGVDKGDTERSFFSTASSEPRYHCLRSGLSSPAWSNAGSWTGSADG-VMPVDMSDAS 1630
[Close]
BLAST of mRNA_L-elsbetiae_contig5503.13779.1 vs. uniprot
Match: A0A6H5L985_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L985_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.960e-12
Identity = 47/101 (46.53%), Postives = 54/101 (53.47%), Query Frame = 0 
Query:  180 SPQSGSFSVAWGXXXXXXXXXXXXXXXXIT------TPGSTGAESCGTERSFFSTASSEPRYHCLRPGLSSPTWSCAGS----ADGLILPLDVSEASSGEE 270
            SP  GSFS+AW                 +        PG  G       R FFSTASSEPRYHCLR G SSP WS AGS    ADG ++P+D+S+AS GEE
Sbjct:    3 SPPGGSFSIAWWNGSSDPVKPVKSTQVGMAGGSGLIAPGVVGVGGGDIARGFFSTASSEPRYHCLRSGFSSPAWSNAGSWVGSADG-VMPVDMSDAS-GEE 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5503.13779.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7S3_9PHAE4.070e-1448.51PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L985_9PHAE4.960e-1246.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5503contigL-elsbetiae_contig5503:11099..11959 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5503.13779.1mRNA_L-elsbetiae_contig5503.13779.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5503 11099..11959 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5503.13779.1 ID=prot_L-elsbetiae_contig5503.13779.1|Name=mRNA_L-elsbetiae_contig5503.13779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=287bp
PSPLCAQTADAAAATRSCATSSCARCDTTGSRQASGGCGDDNLTDLTIQA
PTPDMRGGSGGSGSGWGSPPGSDASGGESGRWRRPRSASRHGQYRDRGGG
GGGNGGGGGGNGGGGGAGFLRFGVASPDGSSNTALESGGGERPAHRRERG
RSRGGVSSASGRSSPPPPSPASSQARNKRSPQSGSFSVAWGSSSGGGGGG
GGGGGGGITTPGSTGAESCGTERSFFSTASSEPRYHCLRPGLSSPTWSCA
GSADGLILPLDVSEASSGEEGGDGGGGGQDDTKDGAG
back to top