prot_L-elsbetiae_contig5501.13776.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5501.13776.1
Unique Nameprot_L-elsbetiae_contig5501.13776.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length987
Homology
BLAST of mRNA_L-elsbetiae_contig5501.13776.1 vs. uniprot
Match: A0A6H5JPU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU6_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 4.870e-46
Identity = 458/1013 (45.21%), Postives = 513/1013 (50.64%), Query Frame = 0
Query:    1 MYHALDRANQRAVLQEQPHVSNFIGGKPTK-DGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRPAGVTQAQHRSLVALKVERDRRLKDQQRLAAAGVTKAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLSSIPAVMM-SAPSSP-------TTAGAAVGAFGFRSLPDSSXXXXXXXXXXASRLPTAPSSSCSDGLRRAARLALRKNDLMSPTMKRLLQDPAQLRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRMTPAELRGSMGGASPL----GGXXXXGNDSYLSSCSSGSSEEGSDGDE-EASSARRGRNLGLPTRVLFGDEQGEEDGDGAQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHAATALEMRXXXXRAXXXRAPAPAAAGISALPTVGATAGQHPRLDGVGCPS--PRSGAGLAGGRGSANCTPTKGILAGRSASSAXXXXXXXCGSSSTIKRRVRFELEERAR---EAASLNSPCQSSVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGEQGRQSETQPRRRWLHSVVLPALAVAFSMGAVALLGDGGGAXXXGHGATRMPAAEYASRSSSP---SSSCSSWPPLGVAVEEREQKRERDEGP--GGATEQAAGASAGAEELA------GEASPGVGADDDVVVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVVEDAVVGDAPLAQVHQQXXXXXXXXXXXXXXPDEAGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALASDSAWGWLEVGAATLSAALLLAAAVAWKSRGPVGDGGWGGXXXXXXXXXXXPYSPLGGXXXXXXXXXXEGQELGRYQTVEMVKMGDTPAKVRSVNRSRRIGSAQRPAPPGMLIVDLGAAALNM 983
            MYHALDRANQRAVLQEQPHVSNFI GK +K DG       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    QRPAGVTQAQHRSLVALKV+RDRRLKDQQRLA AGV K+ +XXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXISLS IPA M  SAP SP       TTA      FG RS   S           AS++P+ PSSSCSDGLRRAARLALRK +LMSPT+KRLLQ+P+QL+TA                                        GGRMTP++LRGSM    P           G+D+ LSS  S SS    +G E +     R + + LP R LF  E  E        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          XXXX  XXX                           G+  PS  P  G  +     S +CTPTKGIL+G                SST+KRRVRFE+EE  R   E A L SPC+SS +                    XXXXXXXXXXXX   +G+ S       WL   V+ AL+VA S+GAVA LG  G     G     +P   Y+     P         + P+  AVE    +R  D G   G    +AAG  A  +ELA      GE + G   +D+V VG                                            A  E+     A  A   +               P                                           XXXX      S WGW EVGAA   A  LLAA VAW+    +G GG              P +P  G           G+ LGRYQTVE+VK GDTPA +RSV RS RIGS+Q     G +I+DLG AAL+M
Sbjct:    1 MYHALDRANQRAVLQEQPHVSNFIAGKTSKNDGPSSSVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----QRPAGVTQAQHRSLVALKVQRDRRLKDQQRLATAGVAKS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRVLTDAGXXXXXXISLSRIPAAMSASAPCSPATKASTATTAAGGGTCFGLRSPAGSGSG--------ASQIPSPPSSSCSDGLRRAARLALRKKNLMSPTLKRLLQNPSQLQTAAHRAGGDETRDDGAYVGSPGSEESELGKEDYGRVGGAGS-GGRMTPSDLRGSMSWTLPFTARSDSVVGDGSDACLSSYCSSSSGSDHEGQELDGGGTTRLKRMKLPNRKLFRPEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXGLSWPSFSPHGGGSI-----SVSCTPTKGILSG-----GPGKGFAATEGSSTVKRRVRFEMEEAERMAAEEACLASPCRSSSS-----------LSPGWGGSKXXXXXXXXXXXXXERRGKWSA------WLRPFVVSALSVAVSVGAVAFLGFEGQGKAPGP----VPDGSYSPVRLLPWLEEQPQGLFCPVAAAVEPVTSERRTDGGNVVGPVEGEAAGVLAERDELAEEMEEEGEQAAGAVVEDEVAVGSSGKVVE-------------------------------------AGTEEREGASADPAAAVRSSATVTRPKYRSPVSP------------------------------------------AXXXXXXXXXXSMWGWFEVGAAVFGALALLAA-VAWRG---LGGGGVEDCGEFDGGGGEAPATPTHGGDGG-------GETLGRYQTVELVKKGDTPATLRSVKRSYRIGSSQASPRSGTVIMDLGPAALHM 860          
BLAST of mRNA_L-elsbetiae_contig5501.13776.1 vs. uniprot
Match: D8LPX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX4_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.750e-14
Identity = 59/121 (48.76%), Postives = 69/121 (57.02%), Query Frame = 0
Query:  863 SAWGWLEVGAATLSAALLLAAAVAWKSRGPVGDGGWGGXXXXXXXXXXXPYSPLGGXXXXXXXXXXEGQELGRYQTVEMVKMGDTPAKVRSVNRSRRIGSAQRPAPPGMLIVDLGAAALNM 983
            S WGW EVGAA   A  LLAA VAW+S   +G GG              P +P  G           G+ LGRYQTVE+VK GDTPA +RSV RS RIGS+Q     G +I+DLG AAL+M
Sbjct:  426 SMWGWFEVGAAVFGALALLAA-VAWRS---LGGGGVEDCGEFDGGGGEAPATPTHGGDGG-------GETLGRYQTVELVKKGDTPATLRSVKRSYRIGSSQASPRSGTMIMDLGPAALDM 535          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5501.13776.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPU6_9PHAE4.870e-4645.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPX4_ECTSI4.750e-1448.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.160.10.10coord: 703..804
e-value: 1.5E-7
score: 33.0
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 888..986
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..863
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 864..887
IPR011004Trimeric LpxA-like superfamilySUPERFAMILY51161Trimeric LpxA-like enzymescoord: 727..785

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5501contigL-elsbetiae_contig5501:7721..12393 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5501.13776.1mRNA_L-elsbetiae_contig5501.13776.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5501 7539..12411 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5501.13776.1 ID=prot_L-elsbetiae_contig5501.13776.1|Name=mRNA_L-elsbetiae_contig5501.13776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=987bp
MYHALDRANQRAVLQEQPHVSNFIGGKPTKDGTGGGGGSGSAVTAAAGSG
GGTATGAAAAAAAAGAGADVGSKPAPSSVSGVSSSAASVAVADDSAAAAA
AAAAASAAATRIAMATGGGGGGGQRPAGVTQAQHRSLVALKVERDRRLKD
QQRLAAAGVTKAPSSSSASAAGRAVPGGGHRASAKAAAVAVGGAGAGGGG
GGGGGGISLSSIPAVMMSAPSSPTTAGAAVGAFGFRSLPDSSGGGGGGGG
GSASRLPTAPSSSCSDGLRRAARLALRKNDLMSPTMKRLLQDPAQLRTAA
AAAAAAATRRSSEDDYGGLSSPGSEESGLDTERGGGGGAGGRMTPAELRG
SMGGASPLGGSSSIGNDSYLSSCSSGSSEEGSDGDEEASSARRGRNLGLP
TRVLFGDEQGEEDGDGAQPPPPPPPPPPQSPKQQRTSAVARAAASASAAR
HAATALEMRPPPPRAPPARAPAPAAAGISALPTVGATAGQHPRLDGVGCP
SPRSGAGLAGGRGSANCTPTKGILAGRSASSAAGGAAASCGSSSTIKRRV
RFELEERAREAASLNSPCQSSVTGGGGSGWWSRAAAADGEGGGGGGRGGG
DGDDDRGEQGRQSETQPRRRWLHSVVLPALAVAFSMGAVALLGDGGGAGA
GGHGATRMPAAEYASRSSSPSSSCSSWPPLGVAVEEREQKRERDEGPGGA
TEQAAGASAGAEELAGEASPGVGADDDVVVGDGVVVDDDFVVDDDFVVGD
DFVVEDDFVVEDDFVVEDDFDVGDGAVVEDAVVGDAPLAQVHQQQQQQQQ
QQHNHHYQPDEAGGGTGGTAGTDGSVSASAAPATTESRPQESSTPPSPPL
PPSSATSALASDSAWGWLEVGAATLSAALLLAAAVAWKSRGPVGDGGWGG
GDGGGDGGGDGPYSPLGGGGGGGAGGGGEGQELGRYQTVEMVKMGDTPAK
VRSVNRSRRIGSAQRPAPPGMLIVDLGAAALNMPNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011004Trimer_LpxA-like_sf