prot_L-elsbetiae_contig550.13774.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig550.13774.1
Unique Nameprot_L-elsbetiae_contig550.13774.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length922
Homology
BLAST of mRNA_L-elsbetiae_contig550.13774.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 938 bits (2425), Expect = 3.320e-309
Identity = 586/970 (60.41%), Postives = 673/970 (69.38%), Query Frame = 0
Query:    3 VFLRAKFPGSRGSLALVLASHRPHAEASLGRLLVKSSPRLLHTARPARTSSRPAQEEHHAAG-GADAKLAANAAETTAERLQEELFRALCQPRPSSPSLVALVRGIVAAGAAPSLTAVQALADHLAAAKDAKSLKALLSLLKGSKPGLAVGGAGSETTEHATGILFSRLVRAHCRRQDVTSALAEVAEMEAAGGEPSPEMFSYLLDACAIARPPLLREMEAVWARVE-------------------------------EQGLTTTLDVGQDLFVARMAAHANGAGYAPPGQGQEGDWQQALLEKVDGTWGEMLKAPACADVAS-------EEGELVTAESWVSRAAALALCARGSGAGSDAAMSRSLEALQSYQRCGGRFSGSEDVFALAEVVRGLARCGRQDEVSRAADILADLRQAARQAEDDADRANASTTNTAIDKAKARAAMTRAARVPEELLRALGARGRGLDSACGRPYGLSLLRVVEDVAAEAFACGERSLEGVDSRLTATLQAVLTVSRLLDRGDADVINKASRAALDCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEAAGARRGWPGPNLAAMSLLTLLHVSQDRLEGIPAALDVLQQMHDRGLAPPASLAAQLQTVFKRHGTVRQKRRASFLLARALEGFGPPPDGD-------TAPDDAVDAPLVTGVGDAIRGMVESSTTRGAGEWDARQTLVAADKPANGGPPGASDGDGAGGRSTGDAPAVASLSAEASYQLLRQRIRDESIRGAASAGVRSVEQACAAAAASAGAEI----GQKEDREGQRHPSTMASTQELEPAESSHGDVLWRATVLAEKGRAHAALAALQLVDGRKRGTRVDVPYKVYALVFRALANGYSARGWEELELAAAPTEALKWLLRGMARQGYSPNATILNFGLESFAVAARTRKVQEGEEEVRARVCTEAMDFMEGMRDGWNGLIPPVVPNLVSFNIIIKV 922
            +FLR    GS+  LAL + S     +A L RLL  +SPR +H+A PARTS      +  A+G  A A    ++ E    +LQEE+FR LC+PRPSSPSLVALVRG+VAAGA PS+ AV+ALADH + AKDA+S+KA+LSLLK SKPGL        T     GI+FSRLVRAHCRRQDVTSALAEV EMEA G E   E++S LL  CAIARPPLL E+EAVW  ++                               E+GLTT   V QDLFV  M  HAN AGYA  G  Q+ D QQ  LEKVD  W  ML+A   A  AS       +EG LVT ESW++RAAALALC R SG  S AAMSRS++A +SY+R GG F+  ED+F LAEVVRGLARCGRQ EV     IL+DLRQ A +AE +A    ASTT TA+DKAK R+A TRAA V +ELLRALGARGRGLDS   R YGLSLLRVV+DVAA+A ACGERS   VDSRLTATLQAVLT SR LDR DA  INKA R ALD AA                           G      RR W GPNLAA+SLL LLHVSQ+R EGIPAA+DVLQ+MHDRGL PPA+LAAQL+TVFKRHGTVRQKRR+SFLLARAL+GFGPP D +       TA +   DA  V  VG AIRGMV+SSTTRG GEWDA++ L AA+K A+GG  G + G+     STGD+   A  SAE SYQLLRQR R+ S+ G AS GVR+VEQ+CAAAA +A AE+    G+  DR   RHPS   +      A  SH D+L R TVLAE+GR HAALAALQ VDGRKRGTRV VPY+VYAL+FRALANGYSA+G EEL LAAAP EAL+WLLRGMARQGYS   T LNFGLE+FAVAA+T++V+EGEEEVRARVCTEAMDFMEGMRDGWNGL+PPV PN+VSFNII+KV
Sbjct: 1645 LFLRRSLVGSKRELALAVCSRSQRGQAPLARLLAGASPRQVHSALPARTS---VPVDGGASGTAAGAARPEDSIEVATSQLQEEMFRVLCEPRPSSPSLVALVRGMVAAGAQPSIEAVEALADHFSEAKDARSIKAVLSLLKPSKPGL--------TAVDPIGIMFSRLVRAHCRRQDVTSALAEVVEMEATGREVDLEVYSDLLHGCAIARPPLLGEVEAVWTHIQVRAVPAHARVSQGALVRIATSLADHARSRYMERGLTTRGGVQQDLFVGLMTTHANSAGYALFGDNQQ-DQQQVPLEKVDEAWDGMLEALNVAASASTDPDRTVDEGGLVTPESWMARAAALALCVRDSGLVSGAAMSRSMDAFRSYRRYGGSFASREDIFGLAEVVRGLARCGRQSEVEA---ILSDLRQDAEKAERNASAVAASTTKTAVDKAKTRSAATRAALVFDELLRALGARGRGLDSG-DRLYGLSLLRVVDDVAAQAHACGERSQGDVDSRLTATLQAVLTTSRFLDREDATSINKAIRTALDSAAAAIAAEVGGRHPVEDLQ----------GGSEPELRREWAGPNLAALSLLALLHVSQNRWEGIPAAIDVLQEMHDRGLTPPATLAAQLETVFKRHGTVRQKRRSSFLLARALDGFGPPRDNNNDDGADGTAAEQEGDARRVGRVGGAIRGMVKSSTTRGVGEWDAQEPLGAAEKYASGG--GDTQGNDEASYSTGDS--AAQPSAEQSYQLLRQRRREASLNGNASVGVRNVEQSCAAAAVAAAAEVTKDAGRGLDR---RHPSQAPTP----GASESHRDILRRVTVLAERGRPHAALAALQAVDGRKRGTRVSVPYRVYALLFRALANGYSAQGCEELGLAAAPAEALQWLLRGMARQGYSAKTTTLNFGLEAFAVAAKTKQVREGEEEVRARVCTEAMDFMEGMRDGWNGLLPPVAPNVVSFNIIVKV 2577          
BLAST of mRNA_L-elsbetiae_contig550.13774.1 vs. uniprot
Match: D7FVF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF8_ECTSI)

HSP 1 Score: 872 bits (2254), Expect = 2.610e-305
Identity = 535/882 (60.66%), Postives = 606/882 (68.71%), Query Frame = 0
Query:  107 IVAAGAAPSLTAVQALADHLAAAKDAKSLKALLSLLKGSKPGLAVGGAGSETTEHATGILFSRLVRAHCRRQDVTSALAEVAEMEAAGGEPSPEMFSYLLDACAIARPPLLREMEAVWARVEEQGLTTTLDVGQDLFVARMAAHANGAGYAPPGQGQEGDWQ--------------------------------------------QALLEKVDGTWGEMLKAPACADVAS-------EEGELVTAESWVSRAAALALCARGSGAGSDAAMSRSLEALQSYQRCGGRFSGSEDVFALAEVVRGLARCGRQDEVSRAADILADLRQAARQAEDDADRANASTTNTAIDKAKARAAMTRAARVPEELLRALGARGRGLDSACGRPYGLSLLRVVEDVAAEAFACGERSLEGVDSRLTATLQAVLTVSRLLDRGDADVINKASRAALDCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEAAGARRGWPGPNLAAMSLLTLLHVSQDRLEGIPAALDVLQQMHDRGLAPPASLAAQLQTVFKRHGTVRQKRRASFLLARALEGFGPPPDGDTAPDDAV------DAPLVTGVGDAIRGMVESSTTRGAGEWDARQTLVAADKPANGGPPGASDGDGAGGRSTGDA------PAVASLSAEASYQLLRQRIRDESIRGAASAGVRSVEQACAAAAASAGA---EIGQKEDREGQRHPSTMASTQELEPAESSHGDVLWRATVLAEKGRAHAALAALQLVDGRKRGTRVDVPYKVYALVFRALANGYSARGWEELELAAAPTEALKWLLRGMARQGYSPNATILNFGLESFAVAARTRKVQEGEEEVRARVCTEAMDFMEGMRDGWNGLIPPVVPNLVSFNIIIKV 922
            +VAAGA PS+ A++ALADH + AKDA+S+KA+LSLLKGSKPGL        T     GI+FSRLVRAHCRRQDVTSALAEVAEMEA G E   E++S LL  CAIARPPLL EMEAVWA ++E+GLTT   V QD+FV  M  HAN AGYAP G  Q+   Q                                            QA LEKVD  W  ML+A   A  AS       +EG LVT ESW++RA++LALC R SG  SD AMSRS+EA +SY+R GG F+  ED+F LAEVVRGLARCGRQ EV     I +DLRQ A +AE +A    ASTT TA+DKAK R+A TRAARV +ELLRALGARGRGLDS  GRPYGLSLL VVEDVA +A ACG+RS   VDSRLTATLQAVLT SR LDR DA  INKA R ALD AA                           G      RR W GPNLAA+SLL LLHVSQ+R EGIPAA+DVLQ+MHDRGL PPA+LAAQL+TVFKRHGTVRQKRR+SFLLARAL+GFGPP D +   DD        DA  V GVG+AIRGMVESSTTRG  EWDA++ L AA++ ANG           GG    +             SAE SYQLLRQR+R+ S+ G ASAGVR+VEQ+CAAA A+A     E G+  DR   RHPS  A TQ    A  SH D+L R TVLAE+GR HAALAALQ VDGRKRGTRV VPY+VYAL+FRALANGYSA+GWEEL LAAAP EAL+WLLRGMARQGY    T LNFGLE+FAVAA+T++V+EGEEEVRARVCTEAMDFMEGMRDGWNGL+PPV PN+VSFNII+KV
Sbjct:    1 MVAAGAQPSIEAIEALADHFSEAKDARSIKAVLSLLKGSKPGL--------TAVDPIGIMFSRLVRAHCRRQDVTSALAEVAEMEATGREVDVEVYSDLLHGCAIARPPLLVEMEAVWAHIQERGLTTRGGVQQDIFVGLMTTHANSAGYAPFGDNQQDQQQRTVLGACGVPHPLKGHGPPLSVPSAADKSNKFQHCSYSPRNSRTQAPLEKVDEAWDGMLEALNEAASASTDPDRTADEGGLVTPESWMARASSLALCVRDSGLISDDAMSRSMEAFRSYRRYGGSFASREDIFGLAEVVRGLARCGRQSEVEA---IFSDLRQDAEKAERNASAVAASTTKTAVDKAKTRSAATRAARVFDELLRALGARGRGLDSG-GRPYGLSLLEVVEDVAGQAHACGDRSQGDVDSRLTATLQAVLTTSRFLDREDAASINKAIRTALDSAATAIASVEDLQ-----------------GRSEPELRREWAGPNLAALSLLALLHVSQNRWEGIPAAIDVLQEMHDRGLTPPATLAAQLETVFKRHGTVRQKRRSSFLLARALDGFGPPRDNNDDGDDGTAAEQEGDARRVVGVGEAIRGMVESSTTRGVDEWDAQEPLAAAEESANGD----------GGTQVNEEGXXXXXXXAVRPSAEQSYQLLRQRLREASLNGNASAGVRNVEQSCAAAVAAAAELTKEAGRGPDR---RHPS-QAPTQ---GASESHRDILKRVTVLAERGRPHAALAALQAVDGRKRGTRVAVPYRVYALLFRALANGYSAQGWEELGLAAAPAEALQWLLRGMARQGYPAKTTTLNFGLEAFAVAAKTKQVREGEEEVRARVCTEAMDFMEGMRDGWNGLLPPVAPNVVSFNIIVKV 836          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig550.13774.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBD4_9PHAE3.320e-30960.41Integrase catalytic domain-containing protein n=1 ... [more]
D7FVF8_ECTSI2.610e-30560.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..92
NoneNo IPR availableCOILSCoilCoilcoord: 368..395
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..922
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 71..282
e-value: 2.8E-7
score: 32.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig550contigL-elsbetiae_contig550:29833..36384 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig550.13774.1mRNA_L-elsbetiae_contig550.13774.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig550 29810..36384 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig550.13774.1 ID=prot_L-elsbetiae_contig550.13774.1|Name=mRNA_L-elsbetiae_contig550.13774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=922bp
MAVFLRAKFPGSRGSLALVLASHRPHAEASLGRLLVKSSPRLLHTARPAR
TSSRPAQEEHHAAGGADAKLAANAAETTAERLQEELFRALCQPRPSSPSL
VALVRGIVAAGAAPSLTAVQALADHLAAAKDAKSLKALLSLLKGSKPGLA
VGGAGSETTEHATGILFSRLVRAHCRRQDVTSALAEVAEMEAAGGEPSPE
MFSYLLDACAIARPPLLREMEAVWARVEEQGLTTTLDVGQDLFVARMAAH
ANGAGYAPPGQGQEGDWQQALLEKVDGTWGEMLKAPACADVASEEGELVT
AESWVSRAAALALCARGSGAGSDAAMSRSLEALQSYQRCGGRFSGSEDVF
ALAEVVRGLARCGRQDEVSRAADILADLRQAARQAEDDADRANASTTNTA
IDKAKARAAMTRAARVPEELLRALGARGRGLDSACGRPYGLSLLRVVEDV
AAEAFACGERSLEGVDSRLTATLQAVLTVSRLLDRGDADVINKASRAALD
CAAAAAAAAAAAATKEDDVGGRRAAADSSQGEEAAGARRGWPGPNLAAMS
LLTLLHVSQDRLEGIPAALDVLQQMHDRGLAPPASLAAQLQTVFKRHGTV
RQKRRASFLLARALEGFGPPPDGDTAPDDAVDAPLVTGVGDAIRGMVESS
TTRGAGEWDARQTLVAADKPANGGPPGASDGDGAGGRSTGDAPAVASLSA
EASYQLLRQRIRDESIRGAASAGVRSVEQACAAAAASAGAEIGQKEDREG
QRHPSTMASTQELEPAESSHGDVLWRATVLAEKGRAHAALAALQLVDGRK
RGTRVDVPYKVYALVFRALANGYSARGWEELELAAAPTEALKWLLRGMAR
QGYSPNATILNFGLESFAVAARTRKVQEGEEEVRARVCTEAMDFMEGMRD
GWNGLIPPVVPNLVSFNIIIKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf