prot_L-elsbetiae_contig5496.13759.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5496.13759.1
Unique Nameprot_L-elsbetiae_contig5496.13759.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length242
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5496.13759.1 vs. uniprot
Match: D8LM84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM84_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 5.990e-55
Identity = 119/137 (86.86%), Postives = 120/137 (87.59%), Query Frame = 0 
Query:    5 RPKTKQATRSASAYLVLSLCERAPLEIHRAAPRLLPTLTNTALSERSSTLRRTYSSALSSVARLAPAAGVSRLASRLAQLFREADPDFDKRQRRTLALLLGDLCRRAGGQLGAPGGGGSDPPGGVRGEQRPGQAGRA 141
            R  T  ATRSASAYLVLSLCERAPLEIHRAAPRLLPTLTNTALSERSSTLRRTYSSALSSVARLAPAAGVSRLASRLAQLFREADPDFDKRQRRTLALLLGDLCRRAGGQLGAPGG      GGV+ E   G  G A
Sbjct: 1689 RSGTGLATRSASAYLVLSLCERAPLEIHRAAPRLLPTLTNTALSERSSTLRRTYSSALSSVARLAPAAGVSRLASRLAQLFREADPDFDKRQRRTLALLLGDLCRRAGGQLGAPGG--KAATGGVKEEGASGGGGFA 1823
[Close]
BLAST of mRNA_L-elsbetiae_contig5496.13759.1 vs. uniprot
Match: A0A7S3XZ13_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ13_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 3.140e-12
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 0 
Query:   12 TRSASAYLVLSLCERAPLEIHRAAPRLLPTLTNTALSER-SSTLRRTYSSALSSVARLAPAAGVSRLASRLAQLFREADP-DFDKRQRRTLALLLGDLCRRAGGQL 115
            TRSASAYLVL+LCER+P E+ R +  LL  L  +AL+ER S+TLR   + A+ SVARLA    V RLA RL +L+R +D    D   + ++  LL  LC RA  Q+
Sbjct:  267 TRSASAYLVLNLCERSPREVGRRSSALLQQLAASALAERRSATLRSALAGAMGSVARLASPFDVGRLARRLVRLYRASDSFSMDSTHKLSVMQLLSSLCLRASSQV 372
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5496.13759.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM84_ECTSI5.990e-5586.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3XZ13_HETAK3.140e-1249.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024372Proteasome component Ecm29PANTHERPTHR23346:SF19PROTEASOME ADAPTER AND SCAFFOLD PROTEIN ECM29coord: 11..114
NoneNo IPR availablePANTHERPTHR23346TRANSLATIONAL ACTIVATOR GCN1-RELATEDcoord: 11..114
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 11..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5496contigL-elsbetiae_contig5496:10196..11781 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5496.13759.1mRNA_L-elsbetiae_contig5496.13759.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5496 10195..11781 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5496.13759.1 ID=prot_L-elsbetiae_contig5496.13759.1|Name=mRNA_L-elsbetiae_contig5496.13759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=242bp
LLSARPKTKQATRSASAYLVLSLCERAPLEIHRAAPRLLPTLTNTALSER
SSTLRRTYSSALSSVARLAPAAGVSRLASRLAQLFREADPDFDKRQRRTL
ALLLGDLCRRAGGQLGAPGGGGSDPPGGVRGEQRPGQAGRAGLRGGVAGG
AAAATARGGRPGRGVPAAGHTGRGVPCRVDGEPGHQAAGVLRTEGPRQDP
GPVAGRGELRPPPDSARAGAGPRAHLGGQGGAAGGRGGALRR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024372Ecm29
IPR016024ARM-type_fold