prot_L-elsbetiae_contig5424.13662.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig5424.13662.1
Unique Name	prot_L-elsbetiae_contig5424.13662.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	218

Homology

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BLAST of mRNA_L-elsbetiae_contig5424.13662.1 vs. uniprot
Match: A0A835YNW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.950e-32
Identity = 79/205 (38.54%), Postives = 118/205 (57.56%), Query Frame = 0

Query:   14 PVPPQVLLEDLTLVIDVALLVAFATAIHLLRQKLITVATLTHALSVAFLVFTVGHYIEQHVIGMDGVEDLLVSRRGPRRGGRGRWWLNSWPTAGLLSIGAIMTLVARFWNCVEEGSCCSVGGADPLHNRCKMMRMRFFSPVFSATVVFVYLCISSRLNALLGGSVLHPRDGGYALAVLASPALLCSICLSGCASVWLYAVLVEEK 218
            P   QVLLEDL+ +ID  +L+A  TA++ LR++ +++ TLT+ALS+A L  TVGHY+EQHV G  G++DL++    P R         S   + L+   +I  L+     C      C  G     H++CK+ R+R    V+ ++  F++   + R+NA++GGSVLHPR GG ALAVL SP L   +    C   WL+A L + +
Sbjct:    3 PSRQQVLLEDLSALIDGVILLACVTALYSLRRQELSLCTLTYALSLALLTATVGHYLEQHVFGEAGIQDLVLY---PSRSA------GSVSVSLLVCAASIGALMCSLTRCQPLSFDCIAGEYAMTHHQCKVHRLRHALRVWLSSAAFLWAAAALRMNAVVGGSVLHPRGGGCALAVLRSPELAACVVAGACGGAWLHAQLAQVQ 198

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5424.13662.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5424.13662.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YNW1_9STRA	1.950e-32	38.54	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 98..119
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 71..97
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 24..43
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 50..70
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 186..214
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 215..218
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..23
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 120..149
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 175..185
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 44..49
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 150..174
None	No IPR available	TMHMM	TMhelix		coord: 47..69
None	No IPR available	TMHMM	TMhelix		coord: 151..173
None	No IPR available	TMHMM	TMhelix		coord: 100..122
None	No IPR available	TMHMM	TMhelix		coord: 20..42
None	No IPR available	TMHMM	TMhelix		coord: 188..210

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5424	contig	L-elsbetiae_contig5424:9249..11351 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5424.13662.1	mRNA_L-elsbetiae_contig5424.13662.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig5424 9249..11351 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig5424.13662.1 ID=prot_L-elsbetiae_contig5424.13662.1|Name=mRNA_L-elsbetiae_contig5424.13662.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
MHTTSLHHEPSFSPVPPQVLLEDLTLVIDVALLVAFATAIHLLRQKLITV
ATLTHALSVAFLVFTVGHYIEQHVIGMDGVEDLLVSRRGPRRGGRGRWWL
NSWPTAGLLSIGAIMTLVARFWNCVEEGSCCSVGGADPLHNRCKMMRMRF
FSPVFSATVVFVYLCISSRLNALLGGSVLHPRDGGYALAVLASPALLCSI
CLSGCASVWLYAVLVEEK