prot_L-elsbetiae_contig542.13650.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig542.13650.1
Unique Nameprot_L-elsbetiae_contig542.13650.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length857
Homology
BLAST of mRNA_L-elsbetiae_contig542.13650.1 vs. uniprot
Match: D8LBB4_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBB4_ECTSI)

HSP 1 Score: 534 bits (1376), Expect = 1.740e-165
Identity = 425/986 (43.10%), Postives = 513/986 (52.03%), Query Frame = 0
Query:   12 VLVGAVLVLAAALGTFRKKKREQRINAPA-DPMEIRRRRLAKLQSSQHQVTPVAPLATATVTAAGASGEVENSPPDLTGASQKKIAGARR------IVPSKPVNAASKMASRSDLRRRREAFVAAAARSAKDVTRTGQEDANTDNSTGLADEXXXXXXXXXXXXXXXXXXXXXXXTAESGE-SPRAEAAQPL-------DPPVSAPTANSLQEISA----------------------QKEXXXXXXXXVVPVLPESPSPA-----------AGGLTT-------------PSS-----------------------------DLPGSMQRGDLFELLQSGARPAYEALTDIVC-EVTNDPVRGNPGRRGDRHAGPDTPVGMCRRWWDAAWGAGKAEAAGVAADVFGLHLDAMQDDLFTSAEEQRATMLLAFLDTSPSPIMTRHVFARNPSAARATLRLAVAPAKGELSRETTAGGQLRANHG---AAAVGVNTT------RRLESWQPLEGLESLEGLFRSAAGAAALGVVLGLEAQQDYAHGAAFEAESVLGPLLGGLPCALSLNDHLRVAQETAGANPVSSPS-TLGNQWAERSSEEAWKKVPTAHRLAKLLAELKSAGPRARNALVHQYNASFEAKARNRQSFVALVEAALVKAMTTKGIMRESKSDICAWLSKAISLHESLPEMCNDQGAPELLGREGSTCASSAFLMSLSALLLRMGAGKFSSLDAKNMDSIDLAYVENGSVQWGGGDYTAAAAVADENLDEEPGDERESETGEGRASASVGRPPHREERGVEEEKGEEPEEHRREEATSTEGSNSGGEXXXXXXXXXXXXXXXXXHR--------------------------------------------------------RRGVNFATELFFLTHRALQVIVAPLTKRREEAQRILGNTALARTGLALHGEDEGQNLAAAPSADGGVARLQLLVFKEASSAMSLGW 840
            +LVGA LV+     T  KKKR++ +  PA D  E+RR+R+A L  SQ   TP+   ATAT T         NS P      +K+++  +R      + P K VN    +ASRS+LR +REAFVAAA     D     Q D   D++  LA+                         ++  E  P + AA P        + P SA     L  ISA                      Q          V    PE+P  A           +  +TT             P S                             +LPG MQ  +L ELL+SGARPAYEALT IVC +V  + +      RGD  AGPDT  G+CRRWWDAAWGAG+ EAA VAADV GLHLDAMQDD+F+SA+EQ   +LLAFL TSPSP+M RHVF  NPSAARA+LRLAVA  +       + G Q+ A      A A   N T      RRLE+WQPLEG                   VLGLEA+++YAHGA  EAESVLGPLLGGL C L+LN+HLR AQE AGANP SS S +LGNQ  ++  EEAWK+VP AH+LA+ LA L+  GPRA NA VH++NAS E  ARNRQSFVALVE  LVKAMTTKG+ RESKSD+CAWLSKAI LHE LPEMC+D  APELLG EGSTCASS FLMS SALLLRMG G FSS+  K+M  +++ YVE GSV W  G   AA+   D++ D+  GDE   E G G                                       N GG XXXXXXXXXXXXXXXXX                                                          RRG +FATELFFLTHRALQVI++PL +RR E ++ + + ALARTGL+L G+ + +       A  G A + L +FKEA+SA+SL W
Sbjct:   22 LLVGAALVILVR--TTWKKKRDESVAEPAVDTAELRRKRMAML-GSQVNSTPIERRATATTT---------NSDPKAKHTPKKRVSRTKRTDALVHVEPEKKVNT---VASRSELRNKREAFVAAATLPPADSGSASQRD--EDSNADLAETEQPPCISASAPMTTSLEGSRPGQPSDVPEPQPSSPAAAPAAVATPAPETPPSATETEQLPCISASASMATSLEGSRPGRPSDVPEPQLSSPAAAPAAVATPAPETPPSATETEQPPCISASAPMTTSLEGSRPGRPSDVPESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLPGWMQLSELLELLESGARPAYEALTGIVCVDVVGNDLTWRS--RGDGPAGPDTTAGVCRRWWDAAWGAGEVEAARVAADVLGLHLDAMQDDIFSSADEQGGALLLAFLGTSPSPLMVRHVFLGNPSAARASLRLAVAVLREVRGEAASPGAQVPAGRRGTRATAASANATAWADTARRLEAWQPLEGXXXXXXXXXXXXXXXXXXAVLGLEARREYAHGAELEAESVLGPLLGGLSCVLTLNEHLRAAQENAGANPYSSGSPSLGNQMTQQLEEEAWKRVPAAHKLARRLAVLRKPGPRAHNAAVHEFNASVETAARNRQSFVALVEGTLVKAMTTKGVARESKSDVCAWLSKAIFLHEGLPEMCDDHSAPELLGGEGSTCASSGFLMSFSALLLRMGVGLFSSVCPKSMGLVEIDYVEGGSVNWSSG-LPAASIDDDDDPDDCEGDE---EVGHG-------------------------------------DGNVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGFSFATELFFLTHRALQVIISPLDRRRGEMRKRISDIALARTGLSLSGDGDAEG---EDEAGRGTAGVALKIFKEANSAISLAW 944          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig542.13650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBB4_ECTSI1.740e-16543.10UBC core domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019474Ubiquitin conjugation factor E4, corePFAMPF10408Ufd2P_corecoord: 574..791
e-value: 1.1E-10
score: 40.9
NoneNo IPR availablePANTHERPTHR13931:SF2UBIQUITIN CONJUGATION FACTOR E4 Acoord: 575..801
NoneNo IPR availablePANTHERPTHR13931UBIQUITINATION FACTOR E4coord: 575..801
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..856
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig542contigL-elsbetiae_contig542:1732..7515 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig542.13650.1mRNA_L-elsbetiae_contig542.13650.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig542 833..13605 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig542.13650.1 ID=prot_L-elsbetiae_contig542.13650.1|Name=mRNA_L-elsbetiae_contig542.13650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=857bp
MMPDLDSFQQTVLVGAVLVLAAALGTFRKKKREQRINAPADPMEIRRRRL
AKLQSSQHQVTPVAPLATATVTAAGASGEVENSPPDLTGASQKKIAGARR
IVPSKPVNAASKMASRSDLRRRREAFVAAAARSAKDVTRTGQEDANTDNS
TGLADESSSSAQTSAAPGASGPAASVSGPTAESGESPRAEAAQPLDPPVS
APTANSLQEISAQKEQQQQQQQRVVPVLPESPSPAAGGLTTPSSDLPGSM
QRGDLFELLQSGARPAYEALTDIVCEVTNDPVRGNPGRRGDRHAGPDTPV
GMCRRWWDAAWGAGKAEAAGVAADVFGLHLDAMQDDLFTSAEEQRATMLL
AFLDTSPSPIMTRHVFARNPSAARATLRLAVAPAKGELSRETTAGGQLRA
NHGAAAVGVNTTRRLESWQPLEGLESLEGLFRSAAGAAALGVVLGLEAQQ
DYAHGAAFEAESVLGPLLGGLPCALSLNDHLRVAQETAGANPVSSPSTLG
NQWAERSSEEAWKKVPTAHRLAKLLAELKSAGPRARNALVHQYNASFEAK
ARNRQSFVALVEAALVKAMTTKGIMRESKSDICAWLSKAISLHESLPEMC
NDQGAPELLGREGSTCASSAFLMSLSALLLRMGAGKFSSLDAKNMDSIDL
AYVENGSVQWGGGDYTAAAAVADENLDEEPGDERESETGEGRASASVGRP
PHREERGVEEEKGEEPEEHRREEATSTEGSNSGGEGGEGREHEEQKREEK
ERHRRRGVNFATELFFLTHRALQVIVAPLTKRREEAQRILGNTALARTGL
ALHGEDEGQNLAAAPSADGGVARLQLLVFKEASSAMSLGWPWKVSAPTPL
PGAPVN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019474Ub_conjug_fac_E4_core