prot_L-elsbetiae_contig5384.13595.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5384.13595.1
Unique Nameprot_L-elsbetiae_contig5384.13595.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length299
Homology
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: A0A6H5KV94_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 9.220e-44
Identity = 111/132 (84.09%), Postives = 117/132 (88.64%), Query Frame = 0
Query:  168 GAGVEPASGGSPNGVAAXXXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRYKAEQADKPVSKKDEFCGGEEKGLSTELVCPMG 299
            GAGV P S    +G+ A XXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIA TQQQKIMSEIWKTL +DEREAYR+RARDDQKRYKAEQADKPV KK+EF   +EKG STELVCPMG
Sbjct:  208 GAGVGPISAAGSDGILAAXXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMG 339          
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: D7G2P1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 3.290e-43
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 0
Query:  207 QSKPQSAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRYKAEQADKPVSKKDEFCGGEEKGLSTELVCPMG 299
            QSKPQSAWMLFIQERREQVKRDNPDIA TQQQKIMSEIWKTL +DEREAYR+RARDDQKRYKAEQADKPV KK+EF   +EKG STELVCPMG
Sbjct:  140 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMG 232          
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: A0A4T0X7K4_9ASCO (HMG box domain-containing protein n=1 Tax=[Candida] inconspicua TaxID=52247 RepID=A0A4T0X7K4_9ASCO)

HSP 1 Score: 53.9 bits (128), Expect = 7.500e-6
Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = 0
Query:  212 SAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRYKAEQADKPVSKKDEFCGGE 286
            SA+M F  ++R+QV+ DNP I+  Q  K++ E WK++   ERE Y  +A +D+KRY+  + +    K++EF   E
Sbjct:   22 SAYMFFANDKRDQVRADNPGISFGQIGKLLGEKWKSMDASEREKYEKQAEEDKKRYEKAKIEYLQKKEEEFTEAE 96          
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: A0A1Y1XKB3_9FUNG (High mobility group box (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XKB3_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 2.610e-5
Identity = 24/62 (38.71%), Postives = 42/62 (67.74%), Query Frame = 0
Query:  209 KPQSAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRYKAE 270
            +P +++M F Q++R +VKRDNPD +  +  KI+  +WK    +E+E Y  +A +D++RY+ E
Sbjct:   16 RPITSFMFFSQDKRAEVKRDNPDASFGELGKIIGNLWKNASPEEKEKYEKKASEDKERYRRE 77          
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: A0A835ZK76_9STRA (Histone-like transcription factor (CBF/NF-Y) and archaeal histone-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK76_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.300e-5
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 0
Query:  212 SAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRY 267
            SAW+LF+ + R++V+ +NPD++ +QQ K++S+IW+ L     E Y  RAR + KRY
Sbjct:  172 SAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRY 227          
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: A0A1Y1VI96_9FUNG (HMG box domain-containing protein (Fragment) n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VI96_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 7.760e-5
Identity = 24/62 (38.71%), Postives = 41/62 (66.13%), Query Frame = 0
Query:  209 KPQSAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRYKAE 270
            +P  ++M F Q++R +VKRDNPD +  +  KI+  +WK    +E++ Y  +A +D++RYK E
Sbjct:   27 RPMISFMFFSQDKRAEVKRDNPDASFGEIGKIIGNLWKNASPEEKKKYEKKALEDKERYKRE 88          
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: L1J476_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J476_GUITC)

HSP 1 Score: 52.8 bits (125), Expect = 9.260e-5
Identity = 25/64 (39.06%), Postives = 43/64 (67.19%), Query Frame = 0
Query:  209 KPQSAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRYKAEQA 272
            +P SAW+LF + +R++VKRDNP+IA T+  K+++  WK L  +E++ +   A    + YK ++A
Sbjct:    8 RPMSAWLLFCEAKRDEVKRDNPEIAFTEINKVIAGKWKALTEEEKKPFEEEAAKRFEEYKGKKA 71          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KV94_9PHAE9.220e-4484.09HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
D7G2P1_ECTSI3.290e-4388.17HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A4T0X7K4_9ASCO7.500e-638.67HMG box domain-containing protein n=1 Tax=[Candida... [more]
A0A1Y1XKB3_9FUNG2.610e-538.71High mobility group box (Fragment) n=1 Tax=Anaerom... [more]
A0A835ZK76_9STRA4.300e-544.64Histone-like transcription factor (CBF/NF-Y) and a... [more]
A0A1Y1VI96_9FUNG7.760e-538.71HMG box domain-containing protein (Fragment) n=1 T... [more]
L1J476_GUITC9.260e-539.06Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 206..276
e-value: 4.2E-14
score: 62.8
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 208..272
e-value: 1.4E-14
score: 54.2
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 207..275
score: 15.203
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 194..283
e-value: 8.2E-16
score: 60.1
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 196..271
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 209..273
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..299
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5384contigL-elsbetiae_contig5384:9793..12320 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5384.13595.1mRNA_L-elsbetiae_contig5384.13595.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5384 8746..12320 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5384.13595.1 ID=prot_L-elsbetiae_contig5384.13595.1|Name=mRNA_L-elsbetiae_contig5384.13595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=299bp
MSDYNQPGATSSLVAAAAAAAAAAAAPPPEAALPAGVPQAYVASEAGYAN
VGGSGFYPNLAPAAVAAVLPVAQTPESMTSPPMAPSAVAPAVHVPVVPSP
ALAAQASAIHYPSTPTNVDGGGGVVERVREDFTNGATLAPAAGAASTETA
ASARAVEAAGVARVAEAGAGVEPASGGSPNGVAAAATGGGASSKKRPSSS
AASAGGQSKPQSAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGN
DEREAYRSRARDDQKRYKAEQADKPVSKKDEFCGGEEKGLSTELVCPMG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf