prot_L-elsbetiae_contig5376.13577.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig5376.13577.1
Unique Name	prot_L-elsbetiae_contig5376.13577.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	164

Homology

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BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A8E6D6I5_9PHAE (Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6I5_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 3.090e-88
Identity = 133/163 (81.60%), Postives = 145/163 (88.96%), Query Frame = 0

Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 163
            M K+    L++  L + +LL S  +AIELDEATRTI  D TGKTTIL+ EQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATP RDNI GLVDY+K+PTTYDGLESIAEIHPSIKSADIFPRMRSLSE+DLVAIAGHILLQPK++SEKWGGGKIYY
Sbjct:    7 MWKRITIRLLMACLLSSSLLVSAAFAIELDEATRTISVDSTGKTTILTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARDNITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEDDLVAIAGHILLQPKIVSEKWGGGKIYY 169

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BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A7S6ZPA0_9STRA (Cytochrome c-550 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA0_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.190e-86
Identity = 129/163 (79.14%), Postives = 144/163 (88.34%), Query Frame = 0

Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 163
            M KKFF+  +   L   N+L    +A+ELDEATRTI  D TGKTTILS+EQVKRGKRLFN SCGQCHVGG+TKTNPNLGLD EALSLATP+R++I GLVDY+K+PTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLV+IAGHILLQPKVI+EKWGGGKIY+
Sbjct:    1 MFKKFFSLFLASFLLFSNILGPVAFAVELDEATRTIPLDNTGKTTILSAEQVKRGKRLFNVSCGQCHVGGITKTNPNLGLDTEALSLATPSRNSITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVSIAGHILLQPKVIAEKWGGGKIYF 163

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BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A023HBF8_LITUN (Cytochrome c-550 n=3 Tax=Mediophyceae TaxID=589449 RepID=A0A023HBF8_LITUN)

HSP 1 Score: 256 bits (655), Expect = 1.980e-85
Identity = 120/163 (73.62%), Postives = 145/163 (88.96%), Query Frame = 0

Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 163
            M KKF     ++L C FN+L ++  AI+LDEATRT+VAD +GKTT+LS EQVKRGKRLFN++CG CHVGG+TKTNPN+GLDPEALSLATP RDN+  LVDY+K+PT+YDGLESIAEIHPSIKSADI+PRMRSL+++DL AIAGHI+LQPK+++EKWGGGKIYY
Sbjct:    1 MFKKFSKFWALVLFCIFNVLITSASAIDLDEATRTVVADSSGKTTVLSPEQVKRGKRLFNATCGACHVGGMTKTNPNVGLDPEALSLATPRRDNVASLVDYLKNPTSYDGLESIAEIHPSIKSADIYPRMRSLTDDDLSAIAGHIMLQPKIVTEKWGGGKIYY 163

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BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A898CXN3_9STRA (Cytochrome c-550 n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A898CXN3_9STRA)

HSP 1 Score: 254 bits (650), Expect = 1.140e-84
Identity = 117/163 (71.78%), Postives = 142/163 (87.12%), Query Frame = 0

Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 163
            M KK+     +IL C FN+  +T  AI+LDEATRT+V D TGKT +L+ EQVKRGKRLFN++CG CHVGG+TKTNPN+GLDPEALSLATP RDNI+ LVDY+K+PTTYDGL+S+AE+HPSIKSADI+PRMRSL++EDL AIAGHI+L P+++SEKWGGGKIYY
Sbjct:    1 MFKKYSKICALILFCIFNIFVTTASAIDLDEATRTVVTDSTGKTVVLTPEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEALSLATPRRDNIEALVDYMKNPTTYDGLDSVAEVHPSIKSADIYPRMRSLTDEDLTAIAGHIMLSPRILSEKWGGGKIYY 163

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BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A089VI76_CERBC (Cytochrome c-550 n=1 Tax=Cerataulina bicornis TaxID=1527800 RepID=A0A089VI76_CERBC)

HSP 1 Score: 254 bits (649), Expect = 1.620e-84
Identity = 119/163 (73.01%), Postives = 141/163 (86.50%), Query Frame = 0

Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 163
            M KK+     ++L C FN+  +T  AI+LD+ATRT+V D  GKTTILS EQVKRGKRLFN++CG CHVGG+TKTNPN+GLDPEALSLATP RDNI  LVD++K+PTTYDGLESIAEIHPSIKSADI+PRMRSL++EDL AIAGHI+L P+++SEKWGGGKIYY
Sbjct:    1 MFKKYSKFCALVLFCIFNIFVTTASAIDLDDATRTVVVDSAGKTTILSPEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEALSLATPRRDNINALVDFMKNPTTYDGLESIAEIHPSIKSADIYPRMRSLTDEDLTAIAGHIMLSPRILSEKWGGGKIYY 163

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BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: D1J771_ECTSI (Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J771_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 4.340e-84
Identity = 129/163 (79.14%), Postives = 143/163 (87.73%), Query Frame = 0

Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 163
            M KKFF SL+I+ L   NL +S+V AIELDEATRTI A   GKT +L+ EQVKRGKRLFNSSCGQCHVGG+TKTNPNLGLD EALSLATP+R+NI GLVDY+K+PTTYDGLESIAEIHPSIKSA+IF RMRSL E DLV IAGHILLQPK++SEKWGGGKIYY
Sbjct:    1 MFKKFFTSLIIVSL--LNLGTSSVLAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKILSEKWGGGKIYY 161

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BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A2U9NP77_9STRA (Cytochrome c-550 n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A2U9NP77_9STRA)

HSP 1 Score: 253 bits (646), Expect = 4.650e-84
Identity = 117/163 (71.78%), Postives = 142/163 (87.12%), Query Frame = 0

Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 163
            M K +     ++L C FN+L ++  AI+LDEATRT+VAD TGKTT+L+ EQVKRGKRLFN++CG CH GGVTKTNPN+GLDPE LSLATP RDNI  LVDY+K+PT+YDGLESIAEIHPSIKSADI+PRMRSL++EDL +IAGH++LQPK+++EKWGGGKIYY
Sbjct:    1 MFKTYSKFYAVVLFCVFNVLVTSASAIDLDEATRTVVADSTGKTTVLTPEQVKRGKRLFNATCGACHTGGVTKTNPNVGLDPEGLSLATPRRDNIAALVDYLKNPTSYDGLESIAEIHPSIKSADIYPRMRSLTDEDLYSIAGHVMLQPKIVTEKWGGGKIYY 163

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BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: H2EV45_9STRA (Cytochrome c-550 n=1 Tax=Ulnaria acus TaxID=1436140 RepID=H2EV45_9STRA)

HSP 1 Score: 253 bits (645), Expect = 6.600e-84
Identity = 121/163 (74.23%), Postives = 139/163 (85.28%), Query Frame = 0

Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 163
            MLKK      I+  C FNL      AI+LDEATRT+VAD +G TT+LS EQVKRGKRLFN++CG CHVGGVTKTNPN+GLDPEALSLATP RDNI  +VDY+K+PTTYDGLESIAE+HPSIKSADI+PRMRSL++EDL  IAGHI+LQPK++SEKWGGGKIYY
Sbjct:    1 MLKKSSQFFGILFFCIFNLFVLNASAIDLDEATRTVVADSSGNTTVLSPEQVKRGKRLFNATCGACHVGGVTKTNPNVGLDPEALSLATPRRDNIASIVDYLKNPTTYDGLESIAEVHPSIKSADIYPRMRSLTDEDLYTIAGHIMLQPKIVSEKWGGGKIYY 163

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BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A0K2RW17_9STRA (Cytochrome c-550 n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RW17_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.330e-83
Identity = 116/163 (71.17%), Postives = 144/163 (88.34%), Query Frame = 0

Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 163
            M KK+  SL++ + C FNL++S+  AI+LDEATRT+  D +GKTT+L++EQVKRGKRLFN++CG CHVGG+TKTNPN+GLDPE LSLATP RDNI  LVDY+K PT+YDGLESIAEIHPS+KSADI+PRMRSL++EDL +I GHI+LQPK+++EKWGGGKIYY
Sbjct:    1 MFKKYSLSLLLSVFCLFNLINSSALAIDLDEATRTVAVDGSGKTTVLTAEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEGLSLATPRRDNILALVDYMKDPTSYDGLESIAEIHPSVKSADIYPRMRSLTDEDLYSIGGHIMLQPKIVTEKWGGGKIYY 163

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BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A023HA47_9STRA (Cytochrome c-550 n=1 Tax=Coscinodiscus radiatus TaxID=33642 RepID=A0A023HA47_9STRA)

HSP 1 Score: 251 bits (642), Expect = 1.890e-83
Identity = 120/163 (73.62%), Postives = 140/163 (85.89%), Query Frame = 0

Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 163
            MLKK+     I LL  FN   +   AI+LDEATRT++AD TG T IL+ EQVKRGKRLFN++CG CHVGGVTKTNPN+GLDPEALSLATP RDNI GLVDY+K+PTTYDGLESIA++HPSIKSADI+PRMRSL+ EDL AIAGH++LQPK+++EKWGGGKIYY
Sbjct:    1 MLKKYSIVYSIFLLSIFNFFVTNALAIDLDEATRTVIADSTGNTVILTPEQVKRGKRLFNATCGACHVGGVTKTNPNVGLDPEALSLATPRRDNIAGLVDYLKNPTTYDGLESIADVHPSIKSADIYPRMRSLTNEDLYAIAGHVMLQPKIVTEKWGGGKIYY 163

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A8E6D6I5_9PHAE	3.090e-88	81.60	Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233...	[more]
A0A7S6ZPA0_9STRA	1.190e-86	79.14	Cytochrome c-550 n=1 Tax=Schizocladia ischiensis T...	[more]
A0A023HBF8_LITUN	1.980e-85	73.62	Cytochrome c-550 n=3 Tax=Mediophyceae TaxID=589449...	[more]
A0A898CXN3_9STRA	1.140e-84	71.78	Cytochrome c-550 n=3 Tax=Bacillariophyta TaxID=283...	[more]
A0A089VI76_CERBC	1.620e-84	73.01	Cytochrome c-550 n=1 Tax=Cerataulina bicornis TaxI...	[more]
D1J771_ECTSI	4.340e-84	79.14	Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 R...	[more]
A0A2U9NP77_9STRA	4.650e-84	71.78	Cytochrome c-550 n=2 Tax=Mediophyceae TaxID=589449...	[more]
H2EV45_9STRA	6.600e-84	74.23	Cytochrome c-550 n=1 Tax=Ulnaria acus TaxID=143614...	[more]
A0A0K2RW17_9STRA	1.330e-83	71.17	Cytochrome c-550 n=1 Tax=Triparma laevis TaxID=153...	[more]
A0A023HA47_9STRA	1.890e-83	73.62	Cytochrome c-550 n=1 Tax=Coscinodiscus radiatus Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 29..157 e-value: 5.2E-56 score: 189.9
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 6..155
IPR029490	Cytochrome c-550 domain	PFAM	PF14495	Cytochrom_C550	coord: 28..163 e-value: 3.5E-59 score: 198.4
IPR017851	Photosystem II PsbV, cytochrome c-550 precursor	TIGRFAM	TIGR03045	TIGR03045	coord: 2..160 e-value: 3.2E-75 score: 249.2
IPR017851	Photosystem II PsbV, cytochrome c-550 precursor	HAMAP	MF_01378	PSII_Cyt550	coord: 2..163 score: 42.8
IPR016003	Photosystem II cytochrome c-550 precursor	PIRSF	PIRSF005890	Phot_II_cyt_c550	coord: 1..163 e-value: 4.9E-72 score: 238.8
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 21..26
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..163
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 9..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..26
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..8
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..26 score: 0.876
None	No IPR available	TMHMM	TMhelix		coord: 5..27
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 50..149 score: 10.371

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5376	contig	L-elsbetiae_contig5376:2516..3007 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5376.13577.1	mRNA_L-elsbetiae_contig5376.13577.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig5376 2516..3007 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig5376.13577.1 ID=prot_L-elsbetiae_contig5376.13577.1|Name=mRNA_L-elsbetiae_contig5376.13577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSE
QVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVD
YIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPK
VISEKWGGGKIYY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036909	Cyt_c-like_dom_sf
IPR029490	Cytochrom_C550
IPR017851	PSII_PsbV_cyt_c550
IPR016003	PSII_cyt_c550
IPR009056	Cyt_c-like_dom