prot_L-elsbetiae_contig5374.13572.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5374.13572.1
Unique Nameprot_L-elsbetiae_contig5374.13572.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length139
Homology
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BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 4.320e-68
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0 
Query:    1 AGAAAGVG---GPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAAQRHVGTDGPLSDEERSRSMPLEMWAVTGHGWSYGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPH 122
            AG    VG   GPRWGRWVHPTHLFHECVS+GKLTTAAWYLPLIRDDVAYDAAQRHVG +GPLS+EERSR MPLEMWAVTG GW YGLSHALSCVLLLASLSSNQH FLPEVWLFARKREQSAPH
Sbjct: 2176 AGGVGQVGRCVGPRWGRWVHPTHLFHECVSSGKLTTAAWYLPLIRDDVAYDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGEGWPYGLSHALSCVLLLASLSSNQHAFLPEVWLFARKREQSAPH 2300
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BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 9.110e-67
Identity = 107/125 (85.60%), Postives = 112/125 (89.60%), Query Frame = 0 
Query:    1 AGAAAGVG---GPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAAQRHVGTDGPLSDEERSRSMPLEMWAVTGHGWSYGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPH 122
            AG    VG   GPRWGRWVHPTHLFH+CVS+GKLTTAAWYLPLIRDDVA+DAAQRHVG +GPLS+EERSR MPLEMWAVTG GW YGLSHALSCVLLLASLSSNQH  LPEVWLFARKREQSAPH
Sbjct:  327 AGGVGQVGRCVGPRWGRWVHPTHLFHDCVSSGKLTTAAWYLPLIRDDVAFDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGDGWPYGLSHALSCVLLLASLSSNQHALLPEVWLFARKREQSAPH 451
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BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.690e-21
Identity = 53/115 (46.09%), Postives = 64/115 (55.65%), Query Frame = 0 
Query:    7 VGGPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAAQRHVGTDGPLSDEERSRSMPLEMWAVTGHGWSYGLSHALSCVLLLASLSS-NQHTFLPEVWLFARKREQSA 120
            +GG       HPTHL H C+  G+L TAAW+LPL+ D     A  R           E    +P  M  +TG  WS+GLSHAL C LLL  L + + H  LPEVWLFA KRE+SA
Sbjct:  875 LGGEGGYEGAHPTHLLHACLEQGRLATAAWFLPLVSDHAVSAARSRSAPP------HELEALLPPPMLPLTGAEWSHGLSHALCCCLLLRCLEAPHTHALLPEVWLFACKRERSA 983
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LB77_ECTSI4.320e-6888.00SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KDH8_9PHAE9.110e-6785.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSR2_9STRA5.690e-2146.09RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5374contigL-elsbetiae_contig5374:6222..7704 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5374.13572.1mRNA_L-elsbetiae_contig5374.13572.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5374 6221..7704 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5374.13572.1 ID=prot_L-elsbetiae_contig5374.13572.1|Name=mRNA_L-elsbetiae_contig5374.13572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
AGAAAGVGGPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAA
QRHVGTDGPLSDEERSRSMPLEMWAVTGHGWSYGLSHALSCVLLLASLSS
NQHTFLPEVWLFARKREQSAPHHQQLVRRSSSSSNSSSR
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