prot_L-elsbetiae_contig537.13567.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig537.13567.1
Unique Nameprot_L-elsbetiae_contig537.13567.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length867
Homology
BLAST of mRNA_L-elsbetiae_contig537.13567.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 777 bits (2006), Expect = 1.250e-258
Identity = 504/763 (66.06%), Postives = 559/763 (73.26%), Query Frame = 0
Query:    1 VLDTAAKAGWEKIRFSALRTGKAREAFRXXXXXXXXXXXXXXXXXAAGQWKTHGRPLLESMESLGVPAGEVGSWTAVLLPLSRLGCADECLEVLGMMEAAVGLDAKAGQHSFTILGVDGQRIGGCSPRRKQKYRINLPARAHGGKRGGQRGNRDSDRKDELLTVAHNHCMFAFIKAGRFITSTRLALTP-----TLTLKADTYTYVSAMKAVGATGQWEVAVSLLHELRELEGVAPXXXXXXXXXXXXXXXXXXXXXXXXEGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXAQELVAAEEAGLPVSTPAYNAALKAFAIGKALEPGLDFFRSMQQERRVPLDEQTHNIAIELCKECGDTSRAVGILRAMEAAGHYAEMGRFGLAPNAPVYEAVARACLASRSWRWATLVNRDAVARQSAVAWTACAAGVAMVAAGKGDHGGRILEGARLDGLLGGDE-----AFDTLNAAAGVAMKAMAQASDWDGASRLFDSLLDLGTTPSMQLMVMYIRAQAALAPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAGVSIGAAGXXXXXXXXXXXXXXDF----FASSPGHAALQGLRRLDGLGLDPGANEHTAALFSCAASPEGGGGVAALAVVRSIQEKGLECDGRAAAMVLTALSRAKDWGGAAKLADALEACGISHTDYSATAAISAYGRVGRWKDATDLVETLLLDTEPGAPPAXXXXXTVTTAVFNAGIMACARAGRLEEGMRLLREMWEREVSRDVQTY 749
            VLD AAKAGWEKIRFSALR GK                        AG+W+THGRPL+  M SLGVP G+V SWTAVLLPLSRLGCADECLEVL +ME AVGL       +  +    G R G  +P  ++K+ + +  R HG            DR++ELLTVAHNHCMFAFIKAGR          P     T+T KADTYTYV+AMKAVGA GQWE+AVSLL ELRELEGV+PXXXXXXXXXXXXXXXXXXXXXXXX GEMRRRGXXXXXXXXXXXXXXXXXXXXXXXX QEL+AAEE GLPVSTPAYNAALKAFAIGKAL+PGLDFFR MQ+E RVPLDEQTHNIAIELCKECGDTS AVGILRAME AGHYAEMG +GLAPNAPVYEAVARACLASRSWRWATLV+RDAV RQSAVAWTAC A VAM+A GK  H  R+LEGAR+DGLLGG+E     A+DTL+AAAG AMKAM+QA DW GA+RLFDSLLD G  P MQLMV+YIRAQAA A S                                 G S  +                D     F++SPG AAL  LRRLDGLGL+PGANEHTA LF+CA S + GG  AALAV+RS+ EKGL+C+GRAAAMVL++LS+++DW GAA +AD LEACG++HT+YSATAAISAYGRVGRW DA DL+ETLL D +     A      VTTAVFNAGIMACARAG+LEEGM LLREMW REVSRDVQTY
Sbjct:  457 VLDAAAKAGWEKIRFSALRMGKVAAG-----------------AAVAGRWETHGRPLVLRMGSLGVPEGDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTATAAATPGVPH-SGGRNGSAAPTGEEKHALGVAPREHG-----MDFFHGLDRRNELLTVAHNHCMFAFIKAGRETIPPPPPFPPRDPPSTITCKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXVQELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRAMEGAGHYAEMGLWGLAPNAPVYEAVARACLASRSWRWATLVHRDAVTRQSAVAWTACGAAVAMMATGKVKHAVRVLEGARVDGLLGGEEDEDNDAYDTLSAAAGHAMKAMSQAGDWTGAARLFDSLLDSGAVPGMQLMVLYIRAQAATASSTPPRKSSKPGHDTLPSPPLTEQKYGPNSPTTTTGGSPSSGDASEPGDGVIPSPVFDVRGDAFSASPGLAALLALRRLDGLGLEPGANEHTAVLFACADSGKSGG-PAALAVLRSLLEKGLKCNGRAAAMVLSSLSKSEDWEGAANVADELEACGVTHTEYSATAAISAYGRVGRWGDAVDLLETLLDDNDESTSTA------VTTAVFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTY 1189          
BLAST of mRNA_L-elsbetiae_contig537.13567.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 647 bits (1670), Expect = 3.340e-204
Identity = 502/1018 (49.31%), Postives = 560/1018 (55.01%), Query Frame = 0
Query:    1 VLDTAAKAGWEKIRFSALRTGKAREAFRXXXXXXXXXXXXXXXXXAAGQWKTHGRPLLESMESLGVPAGEVGSWTAVLLPLSRLGCADECLEVLGMMEAAVGLDAKAGQHSFTILGVDGQRIGGCSPRRKQKYRINLPARAHGGKRGGQRGNRDSDRKDELLTVAHNHCMFAFIKAGRF------------------ITS------------------------------TRLALTPTLT-----------------------------LKADTYTYVSAMKAVGATGQWEVAVSLLHELRELEGVAPXXXXXXXXXXXXXXXXXXXXXXXXEGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXAQ-ELVAAEEAGLPVSTPAYNAALKAFAIGKALEPGLDFFRSMQQERRVPLDEQTHNIAIELCKECGDTSRAVGILRAMEAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HYAEMGRFGLAPNAPVYEAVARACLASRSWRWATLVNRDAVARQSAVAWTACAAGVAMVAAGKGDHGGRILEGARLDGLLGG-----DEAFDTLNAAAGVAMKAMAQASDWDGASRLFDSLLDLGTTPSMQLMVMYIRAQAALAPS--PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAGVSIGAAGXXXXXXXXXXXXXXDF----FASSPGHAALQGLRRLDGLGLDPGANEHTAALFSCAASPEGGGGVAALAVVRSIQEKGLECDGRAAAMVLTALSRAKDWGGAAKLADALEACGISHTDYSATAAISAYGRVGRWKDATDLVETLLLDTEPGAPPAXXXXXTVTTAVFNAGIMACARAGRLEEGMRLLREMWEREVSRDVQTY 749
            VLD AAKAGWEKIRFSALR GK   A                    AG+W+THGRPL+  M SLGV  G+V SWTAVLLPLSRLGCADECLEVL +ME AVGL   A   +  +    G+R G  +P   +K+ +            G     D DR++ELLTVAHNHCMFAFIKAGR                   +TS                                  L+P +                              +KADTYTYV+AMKAVGA GQWE+AVSLL ELRELE    XXXXXXXXXXXXXXXXXXXXXXXX GEMRRRGXXXXXXXXXXXXXXXXXXXXXXXX Q EL+AAEE GLPVSTPAYNAALKAFAIGKAL+PGL+FFR MQ+E RVPLDEQTHNIAIELCKECGDTS AVGILR ME AG                                                                                                                                                                                    HYAEMG +GLAPNAPVYEAVARACLASRSWRWATLV+RDAV RQSAVAWTACAA VAM+A GK  H  R+LEGAR+D LLGG     ++ +DTL+AAAG AMKAM+QA DW GA+RLFDSLLD G  PSMQLMV+YIRAQAA A S  P                                G S  +                D     F++SPG AAL  LRRLDGLGL+PGANEHTA LF+CA S + GG  AALAV+RS+QEK L+C+ RAAAMVL++LS+++DW GAAK+AD LEACG++HT+YSATAAISAYGRVGRW+DA DL+ETLL D E  A  A      VTTAVFNAGIMACARAG+LEEGM LLREMW REVSRDVQTY
Sbjct:  337 VLDAAAKAGWEKIRFSALRMGKVSGA------------------AVAGRWETHGRPLVLRMGSLGVSEGDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTAAATATPGVPR-SGRRNGSAAPTGGEKHALGAALLD------GMDFFHDLDRRNELLTVAHNHCMFAFIKAGRHEEAVKHFDTYFRRPQPADVTSWTHHGTGTVKGQGAGRPWDGSEPDPCGVEHDESVLSPDIFSYTHLMSSLQKLGRDRACLSALYEMRARGIKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXXQVELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLEFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRTMEGAGFPPSVVSYNTALGACEVAGDYRLSLRLLKEMKQQQRRRRGGEDRMNGEGKEDRSAIPRRIPSQRGRTSPPPLSPDLWTFNTALGACARAGEWEAVEDLLEEMDSELGQSSNSGSSSNGRRVGGSRKGTVGGDLEVDEMLHEMGGGAADGGISRPASRNFITFATLIMAADAGGEPRRCLEHYAEMGLWGLAPNAPVYEAVARACLASRSWRWATLVHRDAVTRQSAVAWTACAAAVAMMATGKVKHAVRVLEGARVDDLLGGGKDEDNDTYDTLSAAAGHAMKAMSQAGDWTGAARLFDSLLDSGAVPSMQLMVLYIRAQAATASSTPPRKSSKSGDDTLPSPPLTEQIYGPNSPTNTTTTGGSPSSGDASEPGDGVIPSPVFDVRGDDFSASPGLAALLALRRLDGLGLEPGANEHTAVLFACADSGKSGG-PAALAVLRSLQEKDLKCNSRAAAMVLSSLSKSEDWEGAAKVADELEACGVTHTEYSATAAISAYGRVGRWEDAVDLLETLL-DDEDSASTA------VTTAVFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTY 1321          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig537.13567.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B5_ECTSI1.250e-25866.06PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE3.340e-20449.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 573..707
e-value: 7.5E-9
score: 37.6
coord: 185..294
e-value: 2.2E-25
score: 91.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 708..867
e-value: 2.6E-45
score: 157.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 818..851
e-value: 1.0E-7
score: 29.7
coord: 715..745
e-value: 3.0E-4
score: 18.8
coord: 748..781
e-value: 0.0028
score: 15.7
coord: 234..268
e-value: 1.6E-6
score: 25.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 231..280
e-value: 3.3E-12
score: 46.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 232..266
score: 12.463
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 850..867
score: 6.917
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 267..301
score: 7.388
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 710..744
score: 9.525
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 815..849
score: 12.529
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 780..814
score: 10.348
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 196..231
score: 7.794
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 338..372
score: 7.826
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 302..336
score: 7.706
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 629..663
score: 5.711
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 745..779
score: 10.227
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 664..694
score: 6.149
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 70..100
score: 5.963
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 458..492
score: 6.544
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 713..866
e-value: 1.2E-13
score: 50.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 710..866
coord: 464..692
coord: 192..369
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 51..867
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..50
NoneNo IPR availableTMHMMTMhelixcoord: 31..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig537contigL-elsbetiae_contig537:1657..36943 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig537.13567.1mRNA_L-elsbetiae_contig537.13567.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig537 1657..36943 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig537.13567.1 ID=prot_L-elsbetiae_contig537.13567.1|Name=mRNA_L-elsbetiae_contig537.13567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=867bp
VLDTAAKAGWEKIRFSALRTGKAREAFRFRFWFWFWFCFIAAGAAAAGQW
KTHGRPLLESMESLGVPAGEVGSWTAVLLPLSRLGCADECLEVLGMMEAA
VGLDAKAGQHSFTILGVDGQRIGGCSPRRKQKYRINLPARAHGGKRGGQR
GNRDSDRKDELLTVAHNHCMFAFIKAGRFITSTRLALTPTLTLKADTYTY
VSAMKAVGATGQWEVAVSLLHELRELEGVAPDVYVYTAAIAACSTAGRWE
EALDLEGEMRRRGIKPNAYTVTSCISALARGGEWERAAQELVAAEEAGLP
VSTPAYNAALKAFAIGKALEPGLDFFRSMQQERRVPLDEQTHNIAIELCK
ECGDTSRAVGILRAMEAAGHYAEMGRFGLAPNAPVYEAVARACLASRSWR
WATLVNRDAVARQSAVAWTACAAGVAMVAAGKGDHGGRILEGARLDGLLG
GDEAFDTLNAAAGVAMKAMAQASDWDGASRLFDSLLDLGTTPSMQLMVMY
IRAQAALAPSPPSYPSALAAAPPPPPSSPTAATAATAGTAVAAGVSIGAA
GGGSGSGGGGGGGGGDFFASSPGHAALQGLRRLDGLGLDPGANEHTAALF
SCAASPEGGGGVAALAVVRSIQEKGLECDGRAAAMVLTALSRAKDWGGAA
KLADALEACGISHTDYSATAAISAYGRVGRWKDATDLVETLLLDTEPGAP
PAAAAATTVTTAVFNAGIMACARAGRLEEGMRLLREMWEREVSRDVQTYN
TAMALCKASGEWTRAVGLLEAMEADGVAPDAVTFNTVIAACEAGADHWTA
FSLFNQMERAGITPDLWTYNSLANVLGSCGEWERAVGLLEDMRERGLKPD
VVTYSALVSACEKAGQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long