prot_L-elsbetiae_contig5354.13537.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5354.13537.1
Unique Nameprot_L-elsbetiae_contig5354.13537.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length356
Homology
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 4.240e-95
Identity = 210/359 (58.50%), Postives = 235/359 (65.46%), Query Frame = 0
Query:    1 MEGMACFVHGLALVSVLHQSHGFSGV-CPFDPALRPSASSSFRKPSPRR----HAASARSPRRLGPSAALVSPAASGKAR--SSRNTSHACHHPTSGHGDHHQRRQRPSRCSHEDEIWPFRPRPTTTVPSSSPSSLCAVR-GSSSSSRVTSEGSSPGEVGVREDDEAGGGLAADAGKTAPRARKRKKGDKKDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVWALNFATGAVGALMPRQRDSSQEQDEDE 351
            + GMA F H LAL   L Q   F+ V  P  PA     SSSFR+PS         ASA SP R  PS +L  P     AR  SS N   AC     GH      R R  RC  +   W  R RP +T       SL AVR G+SSSS   S G         E +EAG GL A        +R+ K   +  +  KSVL KAG+ALKA FN FMAAST+ SLALAAEA+WQLHG  LTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLP+M+SGTWVILQNAPKL P+G DL GAGSLAALLATPEVLEAAAV+ALLGGTA+WALNFATGAVGALMP Q  SS+E++E++
Sbjct:   14 LGGMARFAHALALACFLRQCGAFNPVGAPPSPAF----SSSFRQPSSLATCCGRVASATSPSRFVPSGSLACPTPPQAARLHSSNNPGDACR--PEGH------RNRRQRCQRDGTEWRLRRRPWST-------SLSAVREGTSSSSGAPSSGQDQ-----LEGEEAGWGLPASGESEPGGSRETKNRGRGKEGGKSVLEKAGNALKAAFNAFMAASTLASLALAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPKLFPKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGALMPGQSKSSREEEEED 348          
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: D7FYX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX7_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 1.130e-55
Identity = 152/291 (52.23%), Postives = 170/291 (58.42%), Query Frame = 0
Query:    1 MEGMACFVHGLALVSVLHQSHGFSGVCPFDPALRPSASSSFRKPSPRR----HAASARSPRRLGPSAALVSPAASGKAR--SSRNTSHACHHPTSGHGDHHQRRQRPSRCSHEDEIWPFRPRPTTTVPSSSPSSLCAVRGSSSSSRVTSEGSSPGEVGVREDDEAGGGLAADAGKTAPRARKRKKGDKKDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPK 285
            + GM    H LAL   L Q   F    P      P+ SSSFR+PS        AASA SPRRL PSA+L  P     AR  SS N   AC     GH      R R  R   +   W  R RP+ T       SL AVR  +SSS   S   +P      E +E G GL A        +R+ K     ++  K VL KAG+ALKA FN FMAAST+ SL LAAEA+WQLHG  LTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLP+M+SGTWVILQNAPK
Sbjct:   14 LGGMVRLAHALALTCFLRQCGAFH---PVGAPPSPAVSSSFRQPSTLTTCCGRAASATSPRRLVPSASLACPTPPQAARLHSSNNPGDACR--PEGH------RNRRYRRRDDGTEWRLRRRPSLT-------SLSAVREGTSSS---SSAPAPAGQDQLEGEEVGWGLPASREPEPGGSRETKNKGGGEEGGKPVLEKAGNALKAAFNAFMAASTLASLVLAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPK 283          
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: A0A836CM52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM52_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.460e-18
Identity = 64/165 (38.79%), Postives = 95/165 (57.58%), Query Frame = 0
Query:  186 NNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVWALNFATGAV-GALMPRQRDSSQEQDE 349
            N++S     G+ +++ +N  + A TV S+ LA +A+ +L    +TL     TL  LLPL   GV GAA+LV ++ R+VRV+VT+P++L G ++   + P LL    DL   G L A+LATPEVLEA A++A++ G  +W +    G V G    R  D     DE
Sbjct:   18 NDESSTRSIGEVVRSAWNGLLVALTVASVVLAVDAVVKLKTQPITLD----TLGNLLPLAAFGVAGAARLVAVLLRLVRVLVTVPVVLGGAYLAAPSIPDLLKHSPDLA-TGGLFAVLATPEVLEAIALIAVIVGAGIWIVRQLAGMVTGMASVRGNDGDDSDDE 177          
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: A0A7S2V4B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.430e-11
Identity = 42/142 (29.58%), Postives = 73/142 (51.41%), Query Frame = 0
Query:  183 KDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVW 324
            +D+  K       D+ K  F   +    + S+  A  A+++L+    TLSN   T+T +LP    G FG  +L+G   R+VR+++++PI++ GTW +    P+ +    DL    SL  + A PE++EA  ++  +G    W
Sbjct:  115 RDQKGKITFQSVLDSAKKAFGFLLVGVAIYSVYTAGTAVYKLYTEPFTLSNLGSTVTNVLPALTFGYFGTLKLIGAFMRLVRILLSVPIVVGGTWFLAPRLPEFIQSSPDLAST-SLLGIFAVPEIVEAIILILFVGSFLFW 255          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGI5_9PHAE4.240e-9558.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYX7_ECTSI1.130e-5552.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM52_9STRA1.460e-1838.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4B2_9STRA4.430e-1129.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 261..264
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 265..283
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 311..337
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 338..355
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..240
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 284..310
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 241..260
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.532
NoneNo IPR availableTMHMMTMhelixcoord: 234..256
NoneNo IPR availableTMHMMTMhelixcoord: 202..224
NoneNo IPR availableTMHMMTMhelixcoord: 314..336
NoneNo IPR availableTMHMMTMhelixcoord: 263..280

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5354contigL-elsbetiae_contig5354:6273..8102 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5354.13537.1mRNA_L-elsbetiae_contig5354.13537.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5354 6223..8302 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5354.13537.1 ID=prot_L-elsbetiae_contig5354.13537.1|Name=mRNA_L-elsbetiae_contig5354.13537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=356bp
MEGMACFVHGLALVSVLHQSHGFSGVCPFDPALRPSASSSFRKPSPRRHA
ASARSPRRLGPSAALVSPAASGKARSSRNTSHACHHPTSGHGDHHQRRQR
PSRCSHEDEIWPFRPRPTTTVPSSSPSSLCAVRGSSSSSRVTSEGSSPGE
VGVREDDEAGGGLAADAGKTAPRARKRKKGDKKDKNNKSVLGKAGDALKA
TFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVF
GAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLA
ALLATPEVLEAAAVVALLGGTAVWALNFATGAVGALMPRQRDSSQEQDED
EDELA*
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