prot_L-elsbetiae_contig5347.13525.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig5347.13525.1
Unique Name	prot_L-elsbetiae_contig5347.13525.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	314

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig5347.13525.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 8.200e-47
Identity = 114/277 (41.16%), Postives = 151/277 (54.51%), Query Frame = 0

Query:   23 KNPGAEQPVIVKSLAFLIDLWHVVVPVVDDVTDVLLLTSTADPASALWWICLITLVVADIDR-LWLLFTLCLTMAFLPFQWCFDTLVSCCCGVDFFGRTAPRLFALMNCRNSA----------------PQGTFRGRLADSFLWVLVGSRSRCSPFWRMISMSLDAKVDDADHAGVGFGAIDKWVSRHPFRFLGKMLFGARFA--LKGGDEGESRRAGVMIRAVGETLVVDSFFLALSVVSEGW-DGNLTGVAGFSALFSVLELLTELQYYIAEAGA 279
            +  G  +P+ V  + FL+ LWH ++P+ DDVTDV+LL  T +    LWW C    V+AD++R L LL TL L + ++PF            G D       R    + C N                  P+   R  + D F+WV+VGSRS+ S   R+  M+    VD  + +G G   ID+ V  HP+  LG+ LF       L G DE  +RR+ VM+RAVGETLVVDS FLALS+ SE W DG   G+  FS +FSVLELLTELQYY++EA A
Sbjct:  160 RGAGRVEPLAVSVVDFLVALWHFLIPIFDDVTDVILLIGTFEDRGGLWWACCGAFVLADVERVLILLVTLLLVLLWVPFA---------LLGTD--ESRGERFEVALKCLNGCHDLKLETVWGGSRFVVPRSALRWPILDGFMWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLPGSDEA-TRRSWVMVRAVGETLVVDSLFLALSLSSETWEDGVSIGI--FSLIFSVLELLTELQYYVSEARA 422

[Close]

BLAST of mRNA_L-elsbetiae_contig5347.13525.1 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.430e-15
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 0

Query:  220 AGVMIRAVGETLVVDSFFLALSVVSEG-WDGNLTGVAGFSALFSVLELLTELQYYIAEAGAVLEPV 284
            A VM+R+VGETLVVD  FLALS VS G WDG+L G+AG SA+FS L+LLTEL+YY+  A AVLE V
Sbjct:  312 ARVMVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASAVLERV 377

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5347.13525.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5347.13525.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JFA4_9PHAE	8.200e-47	41.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JME9_9PHAE	3.430e-15	68.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 103..313
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 79..84
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 31..50
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 56..78
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..30
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 85..102
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 51..55

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5347	contig	L-elsbetiae_contig5347:803..2008 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5347.13525.1	mRNA_L-elsbetiae_contig5347.13525.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig5347 721..5404 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig5347.13525.1 ID=prot_L-elsbetiae_contig5347.13525.1|Name=mRNA_L-elsbetiae_contig5347.13525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
MRDWGGIPTEDDKLRVRAATGRKNPGAEQPVIVKSLAFLIDLWHVVVPVV
DDVTDVLLLTSTADPASALWWICLITLVVADIDRLWLLFTLCLTMAFLPF
QWCFDTLVSCCCGVDFFGRTAPRLFALMNCRNSAPQGTFRGRLADSFLWV
LVGSRSRCSPFWRMISMSLDAKVDDADHAGVGFGAIDKWVSRHPFRFLGK
MLFGARFALKGGDEGESRRAGVMIRAVGETLVVDSFFLALSVVSEGWDGN
LTGVAGFSALFSVLELLTELQYYIAEAGAVLEPVRSPGPATSGGRSEQGA
VSDSSTIGVTANV*