prot_L-elsbetiae_contig534.13514.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig534.13514.1
Unique Nameprot_L-elsbetiae_contig534.13514.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length170
Homology
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BLAST of mRNA_L-elsbetiae_contig534.13514.1 vs. uniprot
Match: D7FQK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK9_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 4.130e-89
Identity = 128/169 (75.74%), Postives = 148/169 (87.57%), Query Frame = 0 
Query:    2 CCRSKLRQELPRLQELITCYRIVTGSFILLLIPLYWGAASDSHPVITPITSYGNGSSWNFGWGRPVLHFGLAFVGMFLDSHPAARLSCVVGMTQAVVLDTLSSYDLGTQIECVDSGRCAVPEHSTLRGLRLLRARDLSSVVLGTWALLLICYLCLVIGICRVRYSFRQL 170
            C RSK R EL +LQELI CYR ++G+FILLL PL+W AAS++ PVITPITS+GNGSSWN+GWGRPVLHFGL FVGMF+D+H AARLSC+VGM QA+VLDTLSSY LGTQI+CV SGRCAVPEH+TL GLRLL++RDL+SV L TWALLL  YL LVIG+CR RY+FRQL
Sbjct:    9 CFRSKARYELSKLQELIVCYRCLSGAFILLLFPLFWVAASEARPVITPITSFGNGSSWNYGWGRPVLHFGLVFVGMFVDTHQAARLSCLVGMMQAIVLDTLSSYALGTQIDCVQSGRCAVPEHTTLSGLRLLQSRDLASVALATWALLLAYYLSLVIGMCRTRYNFRQL 177
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BLAST of mRNA_L-elsbetiae_contig534.13514.1 vs. uniprot
Match: A0A024U9B2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9B2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.120e-6
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = 0 
Query:   71 GLAFVGMFLDSHPAARLSCVVGMTQAVVLDTLSSYDLGTQIECVDSGR-CAVPEHSTLRGLRLLRARDLSSVVLGTWALLLICYLCLVIGICRVRYSFRQL 170
            G+AF G   + H + R+     +   VV+D++S     +   C   G  C+     T+  L LL  RDL S+ L  WALL+  +LC+ IG C  RY+ RQL
Sbjct:  122 GIAF-GFSTNFHSSFRVFVATFLAALVVVDSISEVQYVSIRMCATKGALCSSSRTLTVDRLALLIVRDLVSITLQVWALLVAAFLCVSIGTCHSRYTPRQL 221
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BLAST of mRNA_L-elsbetiae_contig534.13514.1 vs. uniprot
Match: W4GUU1_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GUU1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.390e-5
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0 
Query:   97 VVLDTLSSYDLGTQIECVDSGR-CAVPEHSTLRGLRLLRARDLSSVVLGTWALLLICYLCLVIGICRVRYSFRQL 170
            V+LD++S+    +   C   G  C+  +  T   L LL ARD+  + L  WALL+I +LC+ IGIC  RYS RQL
Sbjct:  138 VILDSISAVHYVSIRMCAKKGALCSSSKALTADRLALLIARDMVGIALQVWALLVISFLCVSIGICHSRYSPRQL 212
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig534.13514.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQK9_ECTSI4.130e-8975.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024U9B2_9STRA4.120e-635.64Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4GUU1_9STRA1.390e-542.67Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..79
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 141..165
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..58
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 166..170
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..140
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availableTMHMMTMhelixcoord: 21..40
NoneNo IPR availableTMHMMTMhelixcoord: 138..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig534contigL-elsbetiae_contig534:23461..23970 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig534.13514.1mRNA_L-elsbetiae_contig534.13514.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig534 23461..23970 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig534.13514.1 ID=prot_L-elsbetiae_contig534.13514.1|Name=mRNA_L-elsbetiae_contig534.13514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MCCRSKLRQELPRLQELITCYRIVTGSFILLLIPLYWGAASDSHPVITPI
TSYGNGSSWNFGWGRPVLHFGLAFVGMFLDSHPAARLSCVVGMTQAVVLD
TLSSYDLGTQIECVDSGRCAVPEHSTLRGLRLLRARDLSSVVLGTWALLL
ICYLCLVIGICRVRYSFRQL
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