prot_L-elsbetiae_contig528.13418.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig528.13418.1
Unique Nameprot_L-elsbetiae_contig528.13418.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length177
Homology
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.720e-65
Identity = 105/115 (91.30%), Postives = 111/115 (96.52%), Query Frame = 0
Query:   62 MATGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSSQA 176
            MA  NHRHKKI+KLAKGYRGRSKSVFKIAIQ+VEKALQQAYRDRKNKKR+FRRLWIERINAGVRQHGM YSVFV+KA+KADVELNRKVLAEMAVTEPYSFRAVVETVKAKGS +A
Sbjct:    1 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA 115          
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A3B9VH17_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9VH17_9PROT)

HSP 1 Score: 145 bits (367), Expect = 4.740e-42
Identity = 70/107 (65.42%), Postives = 89/107 (83.18%), Query Frame = 0
Query:   64 TGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKA 170
            T   RH KIIK+AKGYRGR+KS F++A++KVEKALQ AYRDR+NKKRDFRRLWI RINA  RQHG+SYSVF++  K A++E++RKVLA +A+T+  +F A+VE  KA
Sbjct:    9 TSRRRHNKIIKMAKGYRGRNKSCFRVAVEKVEKALQYAYRDRRNKKRDFRRLWITRINAATRQHGLSYSVFINALKAANIEIDRKVLAHVAMTDAKAFSAIVEKAKA 115          
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A2A5BDS7_9RICK (50S ribosomal protein L20 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2A5BDS7_9RICK)

HSP 1 Score: 144 bits (363), Expect = 1.920e-41
Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 0
Query:   67 HRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVK 169
            +RHKKIIK+AKGYRGR+K+ FKIAI+KVEKALQ AYRDR+N+KRDFR LWI+RINA VRQH M YS F+   KKA +E++RK+LAEMAV +P SF  +VE VK
Sbjct:   12 NRHKKIIKMAKGYRGRAKNCFKIAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVRQHDMIYSTFMGGMKKAGIEVDRKMLAEMAVNDPASFTHIVEQVK 114          
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: W7TQD2_9STRA (50s ribosomal protein l20 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQD2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.360e-41
Identity = 74/115 (64.35%), Postives = 99/115 (86.09%), Query Frame = 0
Query:   57 QQCRSMATGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 171
            Q  RS+A  NHRHKKI+K+AKGYRGR+ + F+IA+Q+VEKALQ AYRDRK KKR+FR LWI+RI A V+Q+GM+YS F+   ++A++ LNRKVLA++AV+EPYSF+AVVETV+++
Sbjct:   46 QPSRSLA--NHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157          
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT)

HSP 1 Score: 142 bits (359), Expect = 8.760e-41
Identity = 64/102 (62.75%), Postives = 90/102 (88.24%), Query Frame = 0
Query:   68 RHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVK 169
            RHKKI+K+AKGYRGRSK+VF++AIQ+VEKALQ AYRDR+ KKR+FR LWI+RINAG R+HGMSYS F+   KKA++E++RK+L+++A+  P +F+++VE ++
Sbjct:   13 RHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKKRNFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114          
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A2S6SBV7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin2 TaxID=2013089 RepID=A0A2S6SBV7_9PROT)

HSP 1 Score: 141 bits (355), Expect = 3.540e-40
Identity = 64/104 (61.54%), Postives = 89/104 (85.58%), Query Frame = 0
Query:   68 RHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 171
            +HKKI+K+AKGYRGRSK+VF+IA+QKVEK LQ AYRDR+ KKR+FR LWI++INAG R+HGMSYS F+   KKA++E++RK+LA++A+  P +F+ +VE V+ +
Sbjct:   13 KHKKILKMAKGYRGRSKNVFRIAVQKVEKGLQYAYRDRRTKKRNFRALWIQKINAGTREHGMSYSQFIKGMKKAEIEIDRKILADIALNNPITFKFIVEKVRGR 116          
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A7X2KDB2_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KDB2_9PROT)

HSP 1 Score: 139 bits (351), Expect = 1.350e-39
Identity = 69/107 (64.49%), Postives = 89/107 (83.18%), Query Frame = 0
Query:   64 TGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKA 170
            T + RHKK++KLAKGYRGR+ + F+IA++KVEK LQ AYRDR+ KKR FR+LWI RINAGVRQHGM+YS F++  K A +EL+RKVLA+MA  EP SF+A+V+T +A
Sbjct:    9 TSHARHKKVLKLAKGYRGRNSTNFRIALEKVEKGLQYAYRDRRAKKRTFRQLWITRINAGVRQHGMTYSQFMNGMKLAGIELDRKVLADMAALEPESFKALVDTARA 115          
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A1M3GWJ7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium 41-28 TaxID=1895706 RepID=A0A1M3GWJ7_9PROT)

HSP 1 Score: 139 bits (351), Expect = 1.350e-39
Identity = 65/103 (63.11%), Postives = 90/103 (87.38%), Query Frame = 0
Query:   64 TGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVE 166
            T + RHKK++KLAKGYRGRSK+ F+IAIQ+VEKALQ AYRDR+N+KRDFR LWI+RINAG R+HG++YS F++   KA ++++RKVLA++AV EP +F+++V+
Sbjct:    9 TTHARHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKRDFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111          
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A4Q7DJH6_9PROT (50S ribosomal protein L20 n=1 Tax=Candidatus Finniella inopinata TaxID=1696036 RepID=A0A4Q7DJH6_9PROT)

HSP 1 Score: 139 bits (351), Expect = 1.430e-39
Identity = 70/113 (61.95%), Postives = 92/113 (81.42%), Query Frame = 0
Query:   64 TGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSSQA 176
            T + RHKKIIK+AKGYRGRSK+ F+IA+Q+VEKALQ AYRDR+NKKRDFR LWI+RINA VR+ G++YSVF++   KA + ++RK +AE+AV EP SF+ +VE VK   ++ A
Sbjct:    9 TTHARHKKIIKMAKGYRGRSKNCFRIAVQRVEKALQYAYRDRRNKKRDFRGLWIQRINAAVRELGLTYSVFMNGLIKAGITIDRKAMAELAVNEPASFKVLVEQVKTSMAAAA 121          
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: UPI00041B8A37 (50S ribosomal protein L20 n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI00041B8A37)

HSP 1 Score: 139 bits (351), Expect = 1.470e-39
Identity = 69/113 (61.06%), Postives = 94/113 (83.19%), Query Frame = 0
Query:   64 TGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSSQA 176
            T + RH+KI+KLAKGYRGR+ + F+IAI+KVEKAL+ AYRDR+NKKRDFR LWI+RINAGVRQHG++YS F++  K A +E++RKVLA++A  EP SF+A+V+  +   S++A
Sbjct:    9 TTHARHRKILKLAKGYRGRNSTCFRIAIEKVEKALRYAYRDRRNKKRDFRGLWIQRINAGVRQHGLTYSRFINGIKLAGIEMDRKVLADLAAREPDSFKALVDRARDALSAKA 121          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G284_ECTSI1.720e-6591.3050S ribosomal protein L20 n=1 Tax=Ectocarpus silic... [more]
A0A3B9VH17_9PROT4.740e-4265.4250S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2A5BDS7_9RICK1.920e-4169.9050S ribosomal protein L20 n=1 Tax=Rickettsiales ba... [more]
W7TQD2_9STRA2.360e-4164.3550s ribosomal protein l20 n=1 Tax=Nannochloropsis ... [more]
A0A2S6SQA5_9PROT8.760e-4162.7550S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2S6SBV7_9PROT3.540e-4061.5450S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A7X2KDB2_9PROT1.350e-3964.4950S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A1M3GWJ7_9PROT1.350e-3963.1150S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A4Q7DJH6_9PROT1.430e-3961.9550S ribosomal protein L20 n=1 Tax=Candidatus Finni... [more]
UPI00041B8A371.470e-3961.0650S ribosomal protein L20 n=1 Tax=Azospirillum hal... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 91..111
NoneNo IPR availableGENE3D1.10.720.90coord: 60..110
e-value: 3.0E-18
score: 67.6
NoneNo IPR availablePRODOMPD002389coord: 75..127
e-value: 4.0E-11
score: 161.0
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 130..156
score: 44.78
coord: 97..126
score: 60.1
coord: 67..96
score: 41.31
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 65..163
e-value: 2.0E-42
score: 143.6
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 64..169
e-value: 2.6E-42
score: 141.7
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 64..171
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 56..170
score: 25.89
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20coord: 111..173
e-value: 6.2E-28
score: 98.1
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 66..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig528contigL-elsbetiae_contig528:27594..29920 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig528.13418.1mRNA_L-elsbetiae_contig528.13418.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig528 27594..30345 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig528.13418.1 ID=prot_L-elsbetiae_contig528.13418.1|Name=mRNA_L-elsbetiae_contig528.13418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MSWSSVLGKIRPQLLWSSLARPGCSSSAGRGLGAAIGGKSGSRQGPWDVL
GGQGQQQQCRSMATGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQ
AYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVL
AEMAVTEPYSFRAVVETVKAKGSSQA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
IPR035566Ribosomal_protein_L20_C