prot_L-elsbetiae_contig5260.13387.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig5260.13387.1
Unique Name	prot_L-elsbetiae_contig5260.13387.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	194

Homology

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BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot
Match: D8LLC4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC4_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.190e-43
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0

Query:    3 TNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWMKYSTWEESQMEFERA 91
            +NRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNW+KYSTWEESQMEFERA
Sbjct:    2 SNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERA 90

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BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot
Match: A0A835ZA95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA95_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.850e-37
Identity = 157/180 (87.22%), Postives = 170/180 (94.44%), Query Frame = 0

Query:    4 NRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWMKYSTWEESQMEFERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWMEWEPEDNAWSAYVKFE 183
            +RN+Q KNRAPA IQI+AEQILREA+DRQ+DVEVKAPRQQITD EEL VFRMRKRKE+ED+IR QR+HIG W+KY+ WEESQ EF RAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWM+WEP+DNAW AY+KFE
Sbjct:    2 SRNIQVKNRAPAPIQISAEQILREARDRQIDVEVKAPRQQITDAEELTVFRMRKRKEYEDSIRMQRQHIGTWIKYAAWEESQAEFARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWMDWEPDDNAWGAYIKFE 181

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BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot
Match: A0A7S2UZX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZX6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.020e-30
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 0

Query:    3 TNRNVQAKNRAPASIQITAEQILREAKDRQ-LDVE-VKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWMKYSTWEESQMEFERA 91
            T +++  KNRAPA IQITAEQILREAK+R  +D E +KAPRQ ITD EEL+ +RMRKRKEFED+IR+QR+H+G WMKY+TWEESQ E+ERA
Sbjct:   17 TAKSIPVKNRAPAPIQITAEQILREAKERSFVDSETIKAPRQNITDLEELQTYRMRKRKEFEDSIRRQRQHLGTWMKYATWEESQKEYERA 107

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BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot
Match: A0A7S2BYH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BYH2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.050e-27
Identity = 57/80 (71.25%), Postives = 72/80 (90.00%), Query Frame = 0

Query:   10 KNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWMKYSTWEESQMEFE 89
            KNRAP  IQI+AEQ+LREA+DR++++E KAPRQQITD EEL+ +RMR+RKEFEDAIRKQR+H+GN++KY+ WEE Q EFE
Sbjct:   24 KNRAPNPIQISAEQLLREARDRKIELEPKAPRQQITDHEELQEYRMRRRKEFEDAIRKQRQHLGNYVKYALWEEQQNEFE 103

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BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot
Match: A0A7S3XNW0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNW0_HETAK)

HSP 1 Score: 115 bits (289), Expect = 1.390e-26
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 0

Query:    2 STNRNVQAKNRAPASIQITAEQILREAKDRQLDVE-VKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWMKYSTWEESQMEFERA 91
            S N+ +Q KNRAPA IQITAEQILRE+K+R +D + +KAPRQ ITD EEL  +RMRKRKEFED+IR+QR+H+G W KY+ WEESQ E+ERA
Sbjct:    4 SINKAIQPKNRAPAPIQITAEQILRESKERSVDGQNIKAPRQNITDLEELTQYRMRKRKEFEDSIRRQRQHLGTWHKYAKWEESQKEYERA 94

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BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot
Match: A0A2G8LIW3_STIJA (Putative crooked neck-like protein 1-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LIW3_STIJA)

HSP 1 Score: 109 bits (272), Expect = 2.460e-26
Identity = 110/184 (59.78%), Postives = 134/184 (72.83%), Query Frame = 0

Query:   10 KNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWMKYSTWEESQMEFERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWMEWEPEDNAWSAYVKFEMRQEEPAKAR 193
            KN+ PA +QITAEQILREAK+R+L+     P+Q+ITD EEL+ +++RKRKEFED +RK R  +GNW+KY+ WE+SQ E +RA                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           ERWM+WEPE+ AW +Y+K E+R +E  +AR
Sbjct:   20 KNKMPAEMQITAEQILREAKERELEAVPAPPKQKITDPEELQEYKLRKRKEFEDNLRKNRSVMGNWIKYAAWEDSQNEIDRARSIYERALDVDHRNITIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGNIAGARQAFERWMQWEPEEQAWLSYIKMELRYKETDRAR 203

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BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot
Match: A0A8J2K5X6_9HEXA (Hypothetical protein (Fragment) n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2K5X6_9HEXA)

HSP 1 Score: 107 bits (268), Expect = 8.360e-26
Identity = 112/184 (60.87%), Postives = 131/184 (71.20%), Query Frame = 0

Query:   10 KNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWMKYSTWEESQMEFERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWMEWEPEDNAWSAYVKFEMRQEEPAKAR 193
            KN+APA IQITAEQ+LREAK+R L++    P+Q+I+D EEL  +++RKRK FED IRK R  IGNW+KY+ WEESQ E +R                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          ERWMEW P++ AW  YV FE+R +E  +AR
Sbjct:   19 KNKAPAEIQITAEQLLREAKERDLEIVAAPPKQKISDPEELAAYQLRKRKAFEDNIRKNRMMIGNWLKYAKWEESQGEIQRCRSIYERALDVDHRNPTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNIAGCRQVFERWMEWHPDEQAWQTYVNFELRYKEIDRAR 202

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BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot
Match: C3YAA6_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YAA6_BRAFL)

HSP 1 Score: 111 bits (277), Expect = 6.180e-25
Identity = 128/184 (69.57%), Postives = 148/184 (80.43%), Query Frame = 0

Query:   10 KNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWMKYSTWEESQMEFERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWMEWEPEDNAWSAYVKFEMRQEEPAKAR 193
            KN+ PA +QITAEQ+LREAK+R+L+V    P+Q+I+DEEEL+ +++RKRKEFED IRK R  IGNW+KY+ WEESQ E +RA              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWMEWEPE+  W  YV FE+R +E  +AR
Sbjct:   22 KNKMPAPVQITAEQLLREAKERELEVLPPPPKQKISDEEELKEYQLRKRKEFEDNIRKNRGLIGNWLKYAQWEESQKELDRARSVYERAIDVEHRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWMEWEPEEQYWHQYVNFELRFKEIDRAR 205

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BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot
Match: A0A8B9KEK9_ASTMX (Crooked neck pre-mRNA splicing factor 1 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9KEK9_ASTMX)

HSP 1 Score: 111 bits (277), Expect = 6.630e-25
Identity = 127/194 (65.46%), Postives = 147/194 (75.77%), Query Frame = 0

Query:    3 TNRNVQ---AKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWMKYSTWEESQMEFERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWMEWEPEDNAWSAYVKFEMRQEEPAKAR 193
            TN  VQ    KN+APA +QITAEQ+LREAK+R+L++    P+Q+ITDEEEL  +++RKRK FED IRK R  I NW+KY+ WEES  E +RA                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ERWMEWEPE+ AW +Y+ FE+R +E  KAR
Sbjct:    2 TNCKVQHCTVKNKAPAEVQITAEQLLREAKERELELLPPPPKQKITDEEELNDYKLRKRKGFEDHIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDHRNVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFERWMEWEPEEQAWHSYINFELRYKEVDKAR 195

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BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot
Match: A0A1A8F794_9TELE (Crooked neck pre-mRNA splicing factor-like 1 (Fragment) n=2 Tax=Clupeocephala TaxID=186625 RepID=A0A1A8F794_9TELE)

HSP 1 Score: 105 bits (262), Expect = 7.020e-25
Identity = 122/179 (68.16%), Postives = 143/179 (79.89%), Query Frame = 0

Query:   10 KNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWMKYSTWEESQMEFERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWMEWEPEDNAWSAYVKFEMRQEE 188
            KN+APA +QITAEQ+LREAK+R+L++    P+Q+ITD+EEL  +++RKRK FED IRK R  I NW+KY+ WEES  E +RA              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ERWMEWEPE+ AW +Y+ FE+R +E
Sbjct:   27 KNKAPAEVQITAEQLLREAKERELELLPPPPKQKITDKEELNDYKLRKRKAFEDNIRKNRTIISNWIKYAQWEESLKEIQRARSIYERALDVDHRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFERWMEWEPEEQAWHSYINFELRYKE 205

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5260.13387.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LLC4_ECTSI	1.190e-43	97.75	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835ZA95_9STRA	1.850e-37	87.22	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2UZX6_9STRA	1.020e-30	70.33	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A7S2BYH2_9STRA	1.050e-27	71.25	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A7S3XNW0_HETAK	1.390e-26	68.13	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A2G8LIW3_STIJA	2.460e-26	59.78	Putative crooked neck-like protein 1-like n=1 Tax=...	[more]
A0A8J2K5X6_9HEXA	8.360e-26	60.87	Hypothetical protein (Fragment) n=1 Tax=Allacma fu...	[more]
C3YAA6_BRAFL	6.180e-25	69.57	Uncharacterized protein n=1 Tax=Branchiostoma flor...	[more]
A0A8B9KEK9_ASTMX	6.630e-25	65.46	Crooked neck pre-mRNA splicing factor 1 n=1 Tax=As...	[more]
A0A1A8F794_9TELE	7.020e-25	68.16	Crooked neck pre-mRNA splicing factor-like 1 (Frag...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003107	HAT (Half-A-TPR) repeat	SMART	SM00386	hat_new_1	coord: 120..152 e-value: 0.0011 score: 28.2 coord: 52..84 e-value: 70.0 score: 9.2 coord: 154..185 e-value: 3.4E-5 score: 33.3 coord: 86..118 e-value: 1.1E-6 score: 38.2
IPR003107	HAT (Half-A-TPR) repeat	PFAM	PF02184	HAT	coord: 87..116 e-value: 7.9E-7 score: 28.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 38..193 e-value: 9.8E-31 score: 109.1
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 62..189
None	No IPR available	PANTHER	PTHR11246:SF3	CROOKED NECK-LIKE PROTEIN 1	coord: 10..193
None	No IPR available	PANTHER	PTHR11246	PRE-MRNA SPLICING FACTOR	coord: 10..193
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 72..173 score: 11.888

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5260	contig	L-elsbetiae_contig5260:1453..4596 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5260.13387.1	mRNA_L-elsbetiae_contig5260.13387.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig5260 1453..4596 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig5260.13387.1 ID=prot_L-elsbetiae_contig5260.13387.1|Name=mRNA_L-elsbetiae_contig5260.13387.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
MSTNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEEL
RVFRMRKRKEFEDAIRKQREHIGNWMKYSTWEESQMEFERARSVYERALE
VDYRNQTIWLRYAEFEMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYME
EMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMRQEEPAKAR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003107	HAT
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom