prot_L-elsbetiae_contig5191.13276.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5191.13276.1
Unique Nameprot_L-elsbetiae_contig5191.13276.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length323
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5191.13276.1 vs. uniprot
Match: D7FMM1_ECTSI (Topo-VIb_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM1_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 1.460e-109
Identity = 182/253 (71.94%), Postives = 212/253 (83.79%), Query Frame = 0 
Query:   67 INFADEDVAVFECQATDSSGSWVTAGVAVERELRSPSRRKVLWDFGSGETTVPLFVHRFANGVPMLDTNTSAACALVAGAASKASWANLGLKISSSRVQRRDGRLRFTLSEAPTPLKVKGGEDWSALSDIKSVHVAVSANSEVIPYTSLRKDAIAHREGYVSATESAVRQGLVCLRSRTSGGFRSAFEAANHMLHQELLPLAAAGVASMVSHSADVSFQKKCLQALGVGNEYVQEKRLCDLLQDELTESVRQE 319
            ++FA EDVAVFECQ  +SS +WV A VAVER   +  +         GETTVPLFVHRFANGVPMLDTNTSAACALVAG ASK SW NLGLKISS+RV+RR+GRLRF LSEAPTPLKV GG DWSAL+DIK+VHVAV+ANS+ +P+TSLRKDAIAH+EGYVSA ESAVRQGL+ L +R SGGFRSA EAA  M+ ++L+PLAA+ VASMVS SA+ +FQKKCLQALGVG+EYVQE+RL DLL+ EL E++RQE
Sbjct:  358 LDFAAEDVAVFECQGKNSS-TWVMAAVAVERAPPTRDQGTFTQQADRGETTVPLFVHRFANGVPMLDTNTSAACALVAGVASKGSWRNLGLKISSARVRRREGRLRFVLSEAPTPLKVNGGADWSALADIKAVHVAVTANSQTVPFTSLRKDAIAHKEGYVSAAESAVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPLAASSVASMVSRSANANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQE 609
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5191.13276.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMM1_ECTSI1.460e-10971.94Topo-VIb_trans domain-containing protein n=2 Tax=E... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015320DNA topoisomerase VI, subunit B, transducerPFAMPF09239Topo-VIb_transcoord: 116..242
e-value: 6.6E-6
score: 26.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5191contigL-elsbetiae_contig5191:5369..12421 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5191.13276.1mRNA_L-elsbetiae_contig5191.13276.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5191 5369..12442 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5191.13276.1 ID=prot_L-elsbetiae_contig5191.13276.1|Name=mRNA_L-elsbetiae_contig5191.13276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=323bp
MHGAGPHQSLGWQQQQRQQHPSASTPTQIENSDESLSFSHGVGAAESASS
SGSVPAARRVRAASSCINFADEDVAVFECQATDSSGSWVTAGVAVERELR
SPSRRKVLWDFGSGETTVPLFVHRFANGVPMLDTNTSAACALVAGAASKA
SWANLGLKISSSRVQRRDGRLRFTLSEAPTPLKVKGGEDWSALSDIKSVH
VAVSANSEVIPYTSLRKDAIAHREGYVSATESAVRQGLVCLRSRTSGGFR
SAFEAANHMLHQELLPLAAAGVASMVSHSADVSFQKKCLQALGVGNEYVQ
EKRLCDLLQDELTESVRQEEARR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015320TopoVI_B_transducer