prot_L-elsbetiae_contig5151.13227.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5151.13227.1
Unique Nameprot_L-elsbetiae_contig5151.13227.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length840
Homology
BLAST of mRNA_L-elsbetiae_contig5151.13227.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI)

HSP 1 Score: 476 bits (1225), Expect = 1.240e-143
Identity = 445/873 (50.97%), Postives = 479/873 (54.87%), Query Frame = 0
Query:    1 QGRAPVVWQVDSLPHDSWDLVAVPSPVGGVQVISVNAVMHVNQSEVRSILAVNGYARATVEPALLGCPVRGGDSDWGWASFRRSHSEREVVDLSSYDVCVELDVVRCAFLTPTSMLLSLRTGEVYALRLHLATXXXXXXXXXXXXXXXXXXXXXXXXXXAACGGPVAPNRVVGQSMRPVGRASPCSVLAVSAARGGXXXXXXXXXXXASTGLVFMGSRVGDSLLVKYAVASTGGTQPGKRGKGAMXXXXXXXXXXXXXLKRELKVETGWEGGGSVSANGASVXXXXXXXXXXXXXXXXXXXXRGTSNPVAGVGRVAAVKEEPKMAEG----------LTGMEVDHPVADGGGGDPGPEGVAADPPVPAADGAQEA--AGAEERP-----TAASGEDMPQPKDGTTAPASAAXXXXXXXXXXXXXXXXXXXXXXKRPDAATQEEGGRGPRRDGGSXXXXXXXXXXKRGRAEERSPSPSEGGTSGSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAAAXGERGE--------------GGPXXXXXXRKRGPEVATDSARAEAQTAPSPVAGATPLAAVDVRVDGGEEEREDPQTARLSREEWEMIEEEEELYGARLGCSPPVGTGNTRG-APLESLGSKDGERIIEAVGFRLKVVDSICTLGPIVDAALVPSAYHVPKTAVAVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIRTSLVCAAGYGKQGSLAVFSAGLRTEARRAFGCRCCAVVVELSVPGATGVYTAPEGRGRAGGGPLGRNRDTLVLVSCCSPSQAPLNAAAAGGD-RPGHTRVLTFEEDAKVVELADGADGNPFVCDAATADVCVMAGGTVVQAHAQ 840
            QGRAPV+WQV++LPHDSWDLV VPSP+GG+QVIS NAVMHVNQSEVRSILAVNGYARATV+PALL CP+RGGDSDWGW SFRRSH EREVVDLSSYDVC+ELDVVRCAFLTPTSMLLSLRTGEVYALRLHL T                          AA G    PNRVVGQSMRPVGRASPCSVLAV+     XXXXXXXXXXXAS GLVFMGSRVGDSLLV Y+VAS G T+PG  GKGA               KRE K E                XXXXXXXXXXXXXXXXXXXX                                   L GM+VD  V  G G        A     P  DG + A  A A+ +P     T+  G ++       T+P                            P     EE G G  +D GS          KRGRAE     PS GG  G+ D                            DDAA+ GE                 G P       + G E   D        AP+  + +   AA D  +D                          +LYGAR+G S   G   + G A L  LGSKDGER+IEAVGFRLKVVDSICTLGPIVDAALVPSAYHVPKT      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GIRTSLVCAAGYG QGSLAVFSAGLRTE           VVVELSVPGATGVY++ EG                                   GD R GHTRVL FEEDAKVVEL +G DGNPFVCDAATADVC MAGGTVVQAH Q
Sbjct:  352 QGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPEREVVDLSSYDVCIELDVVRCAFLTPTSMLLSLRTGEVYALRLHLTTVTAAAADAAGCSRPPGG---------AAFG---TPNRVVGQSMRPVGRASPCSVLAVAX----XXXXXXXXXXXASKGLVFMGSRVGDSLLVDYSVASAG-TRPG--GKGAAVP------------KREPKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLAGMQVDANVGSGDGS------AAMSTRSPGGDGKKVAGDADADGKPSEITETSGGGAEIADGPGAVTSPPIENGNDGSPDPPAATPTKQEAEALSSSPQPDDGEEAGEG--KDAGSRGGSA-----KRGRAER----PSSGGDVGAGDNDGQPDKKRSRVSACADGE---------DDAASSGEAVPATEETTATAAAAVGGAPASTAVGGEEGAEALGDGV-----AAPTVSSESGRPAAADAAIDPTPXXXXXXXXXXXXXXXXXXXXXXXQLYGARIGASASEGADGSGGEAALARLGSKDGERVIEAVGFRLKVVDSICTLGPIVDAALVPSAYHVPKTTKLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GIRTSLVCAAGYGGQGSLAVFSAGLRTE-----------VVVELSVPGATGVYSSSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTRAGHTRVLAFEEDAKVVELPEG-DGNPFVCDAATADVCSMAGGTVVQAHKQ 1146          
BLAST of mRNA_L-elsbetiae_contig5151.13227.1 vs. uniprot
Match: UPI00053C69A0 (cleavage and polyadenylation specificity factor subunit 1 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C69A0)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-6
Identity = 43/125 (34.40%), Postives = 60/125 (48.00%), Query Frame = 0
Query:    5 PVVWQVDSLPHDSWDLVAVPSPVGGVQVISVNAVMHVNQSEVRSILAVNGYARATVEPALLGCPVRGGDSDWGWASFRRSHSEREVVDLSSYDVCVELDVVRCAFLTPTSMLLSLRTGEVYALRL 129
            PV+W   +LPHD++ ++AVPSP+GGV V+S N + H +       LA+N YA                      ASF  S       DL   +  VELD  R  +++    LLS +TGE+  L L
Sbjct:  298 PVIWSAANLPHDAYKILAVPSPIGGVLVLSANTI-HYHSQSASCALALNNYA----------------------ASFDSSQ------DLPRSNFSVELDAARATWISNDVALLSTKTGELLLLTL 393          
BLAST of mRNA_L-elsbetiae_contig5151.13227.1 vs. uniprot
Match: A0A397HFG4_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HFG4_9GLOM)

HSP 1 Score: 64.3 bits (155), Expect = 1.060e-6
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    1 QGRAPVVWQVDSLPHDSWDLVAVPSPVGGVQVISVNAVMHVNQSEVRSILAVNGYARATVEPAL 64
            Q   P++  +D+LPH    L+++P PVGG+ +IS NA++HVNQS     +AVNGYA +T + +L
Sbjct:  278 QKAYPIIQSMDNLPHSCVKLISIPKPVGGILIISANAIIHVNQSSKGIGVAVNGYASSTTDFSL 341          
BLAST of mRNA_L-elsbetiae_contig5151.13227.1 vs. uniprot
Match: A0A1V9XRN3_9ACAR (Cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XRN3_9ACAR)

HSP 1 Score: 64.3 bits (155), Expect = 1.070e-6
Identity = 37/125 (29.60%), Postives = 61/125 (48.80%), Query Frame = 0
Query:    5 PVVWQVDSLPHDSWDLVAVPSPVGGVQVISVNAVMHVNQSEVRSILAVNGYARATVEPALLGCPVRGGDSDWGWASFRRSHSEREVVDLSSYDVCVELDVVRCAFLTPTSMLLSLRTGEVYALRL 129
            P VW   +LP++S+ ++ VP P+GGV +ISVNA++++NQS     +++N +   +    L                               +DVC+ LD  RC FL    ++ SL+ G++Y L L
Sbjct:  296 PPVWSYCNLPYNSFKVLPVPKPIGGVLIISVNALLYLNQSVPPYGVSLNSFTDVSTAFPLK----------------------------QQHDVCISLDSCRCEFLADDRIVFSLKNGDIYVLTL 392          
BLAST of mRNA_L-elsbetiae_contig5151.13227.1 vs. uniprot
Match: A0A197K6H8_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K6H8_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 1.830e-6
Identity = 37/125 (29.60%), Postives = 65/125 (52.00%), Query Frame = 0
Query:    5 PVVWQVDSLPHDSWDLVAVPSPVGGVQVISVNAVMHVNQSEVRSILAVNGYARATVEPALLGCPVRGGDSDWGWASFRRSHSEREVVDLSSYDVCVELDVVRCAFLTPTSMLLSLRTGEVYALRL 129
            P+++ +D LP+D   ++A+P PVGG+ V+S NA++H++Q      +AVNGYA     P +   P++                     D + +D+ +E    +  FL P  +L +LR G++Y + L
Sbjct:  245 PIIYSIDHLPYDCTKIIAMPKPVGGLLVVSANALIHLDQGSSGMGVAVNGYA-----PLVTNFPLQ---------------------DQNHFDIALEGS--QHVFLAPDQILFTLRNGDMYVIEL 341          
BLAST of mRNA_L-elsbetiae_contig5151.13227.1 vs. uniprot
Match: A0A5N5F6T2_9ROSA (Cleavage and polyadenylation specificity factor subunit 1 n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5F6T2_9ROSA)

HSP 1 Score: 63.2 bits (152), Expect = 2.380e-6
Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 0
Query:    5 PVVWQVDSLPHDSWDLVAVPSPVGGVQVISVNAVMHVNQSEVRSILAVNGYARATVEPALLGCPVRGGDSDWGWASFRRSHSEREVVDLSSYDVCVELDVVRCAFLTPTSMLLSLRTGEVYALRL 129
            P++W   +LPHDS+ L+AVPSP+GGV VIS N++ + +QS     LA+NGYA +              DS              + +  SS+ V  ELD     +L     LLS +TGE+  L L
Sbjct:  298 PLIWSAVNLPHDSYKLLAVPSPIGGVLVISANSIHYHSQSASSCALALNGYAVSV-------------DSS-------------QEMPRSSFTV--ELDAANATWLLNDVALLSTKTGELLLLTL 394          
BLAST of mRNA_L-elsbetiae_contig5151.13227.1 vs. uniprot
Match: A0A058ZWU7_EUCGR (Uncharacterized protein n=8 Tax=Myrtoideae TaxID=1699513 RepID=A0A058ZWU7_EUCGR)

HSP 1 Score: 62.8 bits (151), Expect = 3.120e-6
Identity = 42/125 (33.60%), Postives = 60/125 (48.00%), Query Frame = 0
Query:    5 PVVWQVDSLPHDSWDLVAVPSPVGGVQVISVNAVMHVNQSEVRSILAVNGYARATVEPALLGCPVRGGDSDWGWASFRRSHSEREVVDLSSYDVCVELDVVRCAFLTPTSMLLSLRTGEVYALRL 129
            P++W   +LPHD++ L+AVPSP+GGV VIS NA+ H +      +LA+N YA +             G  +   +SF                  VELD     +L    +LLS +TGE+  L L
Sbjct:  294 PLIWSASNLPHDAYKLLAVPSPIGGVLVISANAI-HYHSQSASCVLALNSYASSA-----------DGSQEMPKSSFS-----------------VELDAASATWLLNDVVLLSTKTGELLLLTL 389          
BLAST of mRNA_L-elsbetiae_contig5151.13227.1 vs. uniprot
Match: A0A0A0LKI9_CUCSA (Uncharacterized protein n=7 Tax=Cucumis TaxID=3655 RepID=A0A0A0LKI9_CUCSA)

HSP 1 Score: 61.6 bits (148), Expect = 7.060e-6
Identity = 42/125 (33.60%), Postives = 59/125 (47.20%), Query Frame = 0
Query:    5 PVVWQVDSLPHDSWDLVAVPSPVGGVQVISVNAVMHVNQSEVRSILAVNGYARATVEPALLGCPVRGGDSDWGWASFRRSHSEREVVDLSSYDVCVELDVVRCAFLTPTSMLLSLRTGEVYALRL 129
            P++W   +LPHD++ L+AVPSP+GGV VIS N++ H N      +LA+N YA +              DS                 D+   +  VELD     +L     LLS +TGE+  L L
Sbjct:  295 PLIWSASNLPHDAYKLLAVPSPIGGVLVISANSI-HYNSQSASCMLALNNYAVSA-------------DSSQ---------------DMPRSNFNVELDAANATWLVNDVALLSTKTGELLLLAL 390          
BLAST of mRNA_L-elsbetiae_contig5151.13227.1 vs. uniprot
Match: A0A1Y2GUT6_9FUNG (CPSF A subunit region-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GUT6_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 9.240e-6
Identity = 35/125 (28.00%), Postives = 60/125 (48.00%), Query Frame = 0
Query:    5 PVVWQVDSLPHDSWDLVAVPSPVGGVQVISVNAVMHVNQSEVRSILAVNGYARATVEPALLGCPVRGGDSDWGWASFRRSHSEREVVDLSSYDVCVELDVVRCAFLTPTSMLLSLRTGEVYALRL 129
            P+++ +D LP+D   ++AVP PVGG+ ++S NA++H++Q      + +N YA     P +   P++                       S +   + LD     FL P  +L +LR GE+Y + L
Sbjct:  243 PIIYSIDKLPYDCTKVIAVPKPVGGLLIVSANALIHLDQGSTGVGVGLNAYA-----PMVTDFPLQ-----------------------SQHHFDIALDGAEHVFLAPNQILFTLRNGEMYVVEL 339          
BLAST of mRNA_L-elsbetiae_contig5151.13227.1 vs. uniprot
Match: A0A7J7MMM3_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MMM3_9MAGN)

HSP 1 Score: 61.2 bits (147), Expect = 9.250e-6
Identity = 43/125 (34.40%), Postives = 62/125 (49.60%), Query Frame = 0
Query:    5 PVVWQVDSLPHDSWDLVAVPSPVGGVQVISVNAVMHVNQSEVRSILAVNGYARATVEPALLGCPVRGGDSDWGWASFRRSHSEREVVDLSSYDVCVELDVVRCAFLTPTSMLLSLRTGEVYALRL 129
            P++W  D+L HD++ L+AVPSP+GGV V+S NA+ + +QS V  +LA+N YA A              DS                 +L      VELD     +L+    +LS +TGE+  L L
Sbjct:  298 PLIWSADNLSHDAYKLLAVPSPIGGVLVLSANAIYYHSQS-VSCLLALNNYAVAV-------------DSSQ---------------ELPRSSFTVELDAANTTWLSHEVAMLSTKTGELLLLTL 393          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5151.13227.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W8_ECTSI1.240e-14350.97Cleavage and polyadenylation specificity factor CG... [more]
UPI00053C69A01.050e-634.40cleavage and polyadenylation specificity factor su... [more]
A0A397HFG4_9GLOM1.060e-645.31Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A1V9XRN3_9ACAR1.070e-629.60Cleavage and polyadenylation specificity factor su... [more]
A0A197K6H8_9FUNG1.830e-629.60Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]
A0A5N5F6T2_9ROSA2.380e-636.00Cleavage and polyadenylation specificity factor su... [more]
A0A058ZWU7_EUCGR3.120e-633.60Uncharacterized protein n=8 Tax=Myrtoideae TaxID=1... [more]
A0A0A0LKI9_CUCSA7.060e-633.60Uncharacterized protein n=7 Tax=Cucumis TaxID=3655... [more]
A0A1Y2GUT6_9FUNG9.240e-628.00CPSF A subunit region-domain-containing protein n=... [more]
A0A7J7MMM3_9MAGN9.250e-634.40Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 5..238
coord: 605..748
NoneNo IPR availablePANTHERPTHR10644:SF2CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1coord: 605..748
NoneNo IPR availablePANTHERPTHR10644:SF2CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1coord: 5..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5151contigL-elsbetiae_contig5151:946..11622 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5151.13227.1mRNA_L-elsbetiae_contig5151.13227.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5151 946..11622 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5151.13227.1 ID=prot_L-elsbetiae_contig5151.13227.1|Name=mRNA_L-elsbetiae_contig5151.13227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=840bp
QGRAPVVWQVDSLPHDSWDLVAVPSPVGGVQVISVNAVMHVNQSEVRSIL
AVNGYARATVEPALLGCPVRGGDSDWGWASFRRSHSEREVVDLSSYDVCV
ELDVVRCAFLTPTSMLLSLRTGEVYALRLHLATASTAAAAAATAAVAGDG
SRSAGAGTGAACGGPVAPNRVVGQSMRPVGRASPCSVLAVSAARGGGAGA
GAGGGGGASTGLVFMGSRVGDSLLVKYAVASTGGTQPGKRGKGAMAVAAA
AAAAAAVGLKRELKVETGWEGGGSVSANGASVGGGEMAVASASAAATGEG
GGRGTSNPVAGVGRVAAVKEEPKMAEGLTGMEVDHPVADGGGGDPGPEGV
AADPPVPAADGAQEAAGAEERPTAASGEDMPQPKDGTTAPASAAEAGGGD
GEGASAAAAAATPTPTKRPDAATQEEGGRGPRRDGGSGGSSGSGGSAKRG
RAEERSPSPSEGGTSGSRDNNSNKNNDDQPDKKRPRVSSPAGGGGKGDDA
AAAGERGEGGPGAAAEERKRGPEVATDSARAEAQTAPSPVAGATPLAAVD
VRVDGGEEEREDPQTARLSREEWEMIEEEEELYGARLGCSPPVGTGNTRG
APLESLGSKDGERIIEAVGFRLKVVDSICTLGPIVDAALVPSAYHVPKTA
VAVSGGGGRGGSARSHRAGAKRAAAAAAAAAAAGGGSGGGTSGGGIRTSL
VCAAGYGKQGSLAVFSAGLRTEARRAFGCRCCAVVVELSVPGATGVYTAP
EGRGRAGGGPLGRNRDTLVLVSCCSPSQAPLNAAAAGGDRPGHTRVLTFE
EDAKVVELADGADGNPFVCDAATADVCVMAGGTVVQAHAQ
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