prot_L-elsbetiae_contig5009.13019.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5009.13019.1
Unique Nameprot_L-elsbetiae_contig5009.13019.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length649
Homology
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BLAST of mRNA_L-elsbetiae_contig5009.13019.1 vs. uniprot
Match: D8LDM1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDM1_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.140e-8
Identity = 48/86 (55.81%), Postives = 51/86 (59.30%), Query Frame = 0 
Query:  334 YGDNRAVDSTGYAAGGNGAYQGEPESGRGGGA-----YAQQGDGASYRAEGXGASGYDQGYSGTATNGRMGQQA------ADGAYG 408
            YGD+R  D+ GY A     YQGE E  RGG       Y QQGDG SYRAEG  +SGYDQGYSG   NGR GQQA      AD  YG
Sbjct:  789 YGDSRTGDNGGYPAAVGNGYQGETEGSRGGXXXXXXXYGQQGDGGSYRAEGAASSGYDQGYSGNPNNGRTGQQAGGPSQAADSGYG 874
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5009.13019.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDM1_ECTSI3.140e-855.81RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5009contigL-elsbetiae_contig5009:7638..12867 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5009.13019.1mRNA_L-elsbetiae_contig5009.13019.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5009 7638..12867 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5009.13019.1 ID=prot_L-elsbetiae_contig5009.13019.1|Name=mRNA_L-elsbetiae_contig5009.13019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=649bp
APGLSRPGGGAEPYMENPDRSLGGGGRGGMAGGVGQGRGMMGGPGGGGGG
GGGRYNGREGGGGGGGGGGGGGGGMGGRGDMSGRGGGDMGGRGGGIGEAG
GYADRGGAWGGEGHGAGGGDRRGPPGPSEYNTPSLQAEGAGMHGGGGGSG
NVGGDAYGGGGGGGGYDDYPAERADGAAAGYRDGYSGAADSRGGYSRAAT
GGGGGVEYNDGGGQGRGVGDGVAGGGGGGYAGTGAGTDHGGYAANGAGRD
AAYGAADYDGTARGGKGGGYDDGYGGGAASGRGGTAVDGSDGYRNSGAAG
YRGGSTSGAGNDPYAGAAEHGRSGGQAGGGGGSYGDNRAVDSTGYAAGGN
GAYQGEPESGRGGGAYAQQGDGASYRAEGAGASGYDQGYSGTATNGRMGQ
QAADGAYGGGGAAGNGYDAAPADSRYDRSGGDGYGTTAAAASGSYGGGAA
DTYQSGGSYAQDASTRTPQGSLYGSQQQGYDAPSKAGAGGGGRPQTGDSA
TAKAAGAGGYADNGDYSSSAATTGGGQYRGSGGGYGEQQASGSSGGGGAQ
QSSGYGGGASGGTAYGAQGGGDGGYDAPAASGQGGYGAQGAEGEADYWSR
GGGTATAAATSGGGYAAEAAGGGGTTGQYSGGGDTTSRGGGVQGSYTW*
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