prot_L-elsbetiae_contig5004.13010.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5004.13010.1
Unique Nameprot_L-elsbetiae_contig5004.13010.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length213
Homology
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BLAST of mRNA_L-elsbetiae_contig5004.13010.1 vs. uniprot
Match: D8LRK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK1_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 6.810e-27
Identity = 68/130 (52.31%), Postives = 81/130 (62.31%), Query Frame = 0 
Query:   85 YLSQLPPEAKQRWLHRGWFVMLRVRHQIYLAQ-QHSVSQMSRVWLCRRNARDPRGIT-LAKMDDPLVTAGGERSAGTQGVIGIELCEEGNSNQETARLIEGNPNSEFARAVVSVIGIIEEGLFRHIVLYL 212
            +LS  P   ++RW  RGW VMLR RHQI+LAQ Q + SQ    WLC+R  RD  GIT +   DDPL TAG E S G QG+  IEL E+G  +QE            FA+AVVSV GI+EEG+FR I LYL
Sbjct:  134 HLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQP---WLCKRKLRDLCGITRVMTADDPLATAGNEPSVGAQGIADIELNEQGTYDQE------------FAQAVVSVAGIMEEGIFRGITLYL 248
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5004.13010.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRK1_ECTSI6.810e-2752.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 58..212
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..33
NoneNo IPR availableTMHMMTMhelixcoord: 34..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5004contigL-elsbetiae_contig5004:3769..5191 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5004.13010.1mRNA_L-elsbetiae_contig5004.13010.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5004 2926..5703 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5004.13010.1 ID=prot_L-elsbetiae_contig5004.13010.1|Name=mRNA_L-elsbetiae_contig5004.13010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp
MPNLRTTGSTVKFLRAQPRYLSFGSYSSCIVKSILLVVIPISIALVCALF
WPVVLFICCIRTCSHCIKARQKMAALRRRDEAISYLSQLPPEAKQRWLHR
GWFVMLRVRHQIYLAQQHSVSQMSRVWLCRRNARDPRGITLAKMDDPLVT
AGGERSAGTQGVIGIELCEEGNSNQETARLIEGNPNSEFARAVVSVIGII
EEGLFRHIVLYL*
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