prot_L-elsbetiae_contig494.12901.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig494.12901.1
Unique Nameprot_L-elsbetiae_contig494.12901.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length549
Homology
BLAST of mRNA_L-elsbetiae_contig494.12901.1 vs. uniprot
Match: D8LFJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFJ5_ECTSI)

HSP 1 Score: 600 bits (1547), Expect = 3.380e-209
Identity = 336/522 (64.37%), Postives = 384/522 (73.56%), Query Frame = 0
Query:   27 KAMRNRRVAVDVLTILCFAAAALAFQTVSRLPPGTSRCRTTFEPSVDDDRLNSPARA----------WFAP--VSKGRACSGGGVVMMAQSNRVKSVIARQKKLDRSNAPVILSEKAQRKAKRERRAYFRERFAVSGRRLLTLQQDDPDSFYIGFVGTNQAGRAQALLAVEAFLKRATELKVAKYYNGGANIKLVDAGSMRLSDMSGKDEHKLSLLRRCDLLVHTVRCFDLFEPKPYTPRTRGAKAGVDGEGGNEREADDATRISLLSNLGGGVNPGGGDGEELEGIVVDWPLSPTPLEDIKGTRAEMAYADLQFIEERQKTNHTKWYWRDRSRAFNEKKAISLVIPVLEDAYTVGGELKPVGPGFRQSCLSDKSGRNGTTLSRGKMRASIEEIGLLTPKPVVYMANVPAEAAPSSDSD---HDEDEPKEVSESAEDISRVALAHADKVIGLNRDYRVPAVVGCLRNRDGQSTLGAAVFKAIPRGFLSRDPKFKKAAKSAISKANQRAPQHQRRPARDMIPK 533
            K  R R VA++ L +LCFAA ALAFQT  RL  G S   T    +  D RL +  RA          W      S+        VVMM +SNR+K+VIARQ+ L++S APVILSEKA+RKAKRERRAYFRER+A SGRRL+ LQQ+DPDS YIGFVGTN AGRAQAL AVEA+LKRATE KVAK++ G A IKLVDAG+M LS+M GK E KLSLLR CDLLVH VRCFDLFEPKP+ P  RGA    +   G+E   D+A    LLSNLGGGV  GGGDGEE+E   +DWPLSPTPLEDIK TRAEMAYADLQFIEER KTNHTKW+WR+R+RA NEK AI+LV P+LEDAY  GG L+PVG GFR SCL D+ G NGTTL R K RA+IEEIG LTPKPVVY+ANVP+EAAPSSD D   +D+ EPKE SES E + +VALAHADKV+ L RDY  P VVGCLRN +GQ+ LGAAVFKAIPR FLSRDPK +K+A S   K  QR  Q +RRP     P+
Sbjct:    2 KMKRCRCVAIETLVMLCFAAVALAFQTAVRLSAGDS---TAPPAACSDGRLTASTRALIPNSYRPARWCCTRVASRDGGNKNSRVVMMGRSNRLKTVIARQRNLEKSTAPVILSEKAKRKAKRERRAYFRERYACSGRRLIKLQQEDPDSLYIGFVGTNGAGRAQALGAVEAYLKRATEFKVAKHHKGNAKIKLVDAGNMCLSEMKGKGERKLSLLRHCDLLVHVVRCFDLFEPKPFKP-WRGAGREEEDRPGDE--VDEAPATQLLSNLGGGVKQGGGDGEEVE-EEIDWPLSPTPLEDIKETRAEMAYADLQFIEERHKTNHTKWFWRNRNRALNEKAAIALVTPLLEDAYASGGVLEPVGTGFRNSCLRDEPGENGTTLYRSKRRAAIEEIGFLTPKPVVYVANVPSEAAPSSDEDDDANDDAEPKEASESGEAVRKVALAHADKVVSLKRDYGAPVVVGCLRNPEGQNALGAAVFKAIPRDFLSRDPKLRKSANSPRRKTQQRT-QQRRRPGETKAPR 515          
BLAST of mRNA_L-elsbetiae_contig494.12901.1 vs. uniprot
Match: A0A835YXS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXS7_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.480e-42
Identity = 134/391 (34.27%), Postives = 183/391 (46.80%), Query Frame = 0
Query:  136 KRERRAYFRERFAVSGRRLLTLQQDDPDSFYIGFVGTNQAGRAQALLAVEAFLKRATELKVAKYYNGGANIKLVDAGSMRLSDMSGKDEHKLSLLRRCDLLVHTVRCFDLFEPKPYTPRTRGAKAGVDGEGGNEREADDATRI--SLLSNLGGGVNPGGGDGEELEGIVVDWP--------LSPTPLEDIKGTRAEMAYADLQFIEERQKTNHTKWYWRDRSRAFNEKKAISLVIPVLEDAY------TVGGELKPVGPGFRQSCLSDKSGRNGTTLSRGKMRASIEEIGLLTPKPVVYMANVPAEAAPSSDSDHDEDEPKEVSESAEDISRVALAHADKVIGLNRDYRVPAVVGCLRNRDGQSTLGAAVFKAIPRGFLSRDPKFKKAAKS 510
            KRE R   R R   SG RL  L++D   ++YIG +G N AGR  A+ ++EA L++ TELKV K +   A+++++DAG M L DM  +D  + + LRRC+L++H VRCF+     P  P    A+   D     E     + R+   L+                                 L PTPLED   TRA MAYADL  I ER K NHT  +WR R RA NE  A+  + P L   Y       VGG L+P G  F  S L D   ++G  L   + R +I  +G LT K  ++ A+  A  +                E   D  R A A    V  +   + +      L+  DG   L AAV  A+P+  L+RDPK +KAA+S
Sbjct:   80 KREGRREHRARMGGSGTRLKELREDK--AWYIGVIGMNGAGRGLAVKSLEAALRKQTELKVGKEFVR-ADVRIIDAGRMPLDDMPTQDPGRFAKLRRCNLMIHVVRCFEA----PPAPEPTAAQEEQDLSTAAEAVVPRSRRVPSKLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVLLPPTPLEDALRTRAAMAYADLHIIYERSKVNHTAAFWRVRQRAINEMAALRRIEPELARIYLKASDRAVGGILQPAGDEFSASVLRDS--KDGKHLHE-RQRWAIRPLGFLTCKRTIFCASTSAGGSNG--------------EGRGDSERAATA---AVTEMAEKFGLLCAEAALQAADGGEALAAAVVAAMPKSLLARDPKRRKAARS 443          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig494.12901.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFJ5_ECTSI3.380e-20964.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YXS7_9STRA1.480e-4234.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 55..548
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..54
NoneNo IPR availableTMHMMTMhelixcoord: 34..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig494contigL-elsbetiae_contig494:28393..33999 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig494.12901.1mRNA_L-elsbetiae_contig494.12901.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig494 28364..34491 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig494.12901.1 ID=prot_L-elsbetiae_contig494.12901.1|Name=mRNA_L-elsbetiae_contig494.12901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=549bp
MFHSPVFTYVLSTPAADVQQHLSGKRKAMRNRRVAVDVLTILCFAAAALA
FQTVSRLPPGTSRCRTTFEPSVDDDRLNSPARAWFAPVSKGRACSGGGVV
MMAQSNRVKSVIARQKKLDRSNAPVILSEKAQRKAKRERRAYFRERFAVS
GRRLLTLQQDDPDSFYIGFVGTNQAGRAQALLAVEAFLKRATELKVAKYY
NGGANIKLVDAGSMRLSDMSGKDEHKLSLLRRCDLLVHTVRCFDLFEPKP
YTPRTRGAKAGVDGEGGNEREADDATRISLLSNLGGGVNPGGGDGEELEG
IVVDWPLSPTPLEDIKGTRAEMAYADLQFIEERQKTNHTKWYWRDRSRAF
NEKKAISLVIPVLEDAYTVGGELKPVGPGFRQSCLSDKSGRNGTTLSRGK
MRASIEEIGLLTPKPVVYMANVPAEAAPSSDSDHDEDEPKEVSESAEDIS
RVALAHADKVIGLNRDYRVPAVVGCLRNRDGQSTLGAAVFKAIPRGFLSR
DPKFKKAAKSAISKANQRAPQHQRRPARDMIPKKPPSGEAEKATAAAL*
back to top