prot_L-elsbetiae_contig490.12831.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig490.12831.1
Unique Nameprot_L-elsbetiae_contig490.12831.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length253
Homology
BLAST of mRNA_L-elsbetiae_contig490.12831.1 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 3.150e-54
Identity = 138/262 (52.67%), Postives = 170/262 (64.89%), Query Frame = 0
Query:    1 MDPPRRPGSGWLQNSNGSKNQPALAPTPDRSQITRTAPLPAELIARNGGDPEDEEAXXXXXXXXXXXXXXXXEEE----LCAICYDQLPDLGRGIIACGHVYCFSCIHQWCKTQNDCPGCRLKIRRILKTLSPEDVSK---EDRR---KERDMGKAFKSKKQKRKAXXXXGXVXTQEXXXXXXXXXXXXXXLKPSPAQLRAEPHPEAPGGWMHAEAQQAARQRLXXXXXXXXXXRIQPVQAQGVLAEMAESMRLADADELSP 252
            M PP+RPGSGWLQN+NGSKNQP LAPTPD+S++TRTAPLP ELIAR  G  ++   XXXXXXXXXXXXXXXX       +CAIC D+LP+L RG+++CGHV+CF+CIHQW K  + CPGCR++I+RI KTLSP D +K   E R+    +R M K  K +KQ ++A                         LK +PAQ RA PHP+A GGWM+ + Q       XXXXXXX    IQP  A+G L+E   SM  A A +LSP
Sbjct:   96 MAPPQRPGSGWLQNANGSKNQPTLAPTPDQSEVTRTAPLPEELIARTEGVSKEXXXXXXXXXXXXXXXXXXXXXXXXXXMCAICCDKLPNLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKAKGETRKPVVSQRGMKK--KPRKQLKRARHRDSRAKNPASGFVTKTVRVRPKSLKMTPAQQRAAPHPQARGGWMYVQEQXXXXXXXXXXXXXXARV-IQPALARGALSE---SMTQAGAADLSP 351          
BLAST of mRNA_L-elsbetiae_contig490.12831.1 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 4.430e-54
Identity = 141/301 (46.84%), Postives = 171/301 (56.81%), Query Frame = 0
Query:    1 MDPPRRPGSGWLQNSNGSKNQPALAPTPDRSQITRTAPLPAELIARNGGDPEDEEAXXXXXXXXXXXXXXXXEEE---LCAICYDQLPDLGRGIIACGHVYCFSCIHQWCKTQNDCPGCRLKIRRILKTLSPEDV--SKEDRRKE----------------------------RDMGKAF----------KSKKQKRKAXXXXGXVXTQEXXXXXXXXXXXXXXLKPSPAQLRAEPHPEAPGGWMHAEAQQAARQRLXXXXXXXXXXR------IQPVQAQGVLAEMAESMRLADADELSP 252
            M PP+RPGSGWLQN+NG+KNQP LAPTPD+S++TRTAPLP ELIAR  G  ++EEA      XXXXXXXXXX      +CAIC D+LPDL RG+++CGHV+CF+CIHQW K  + CPGCR++I+RI KTLSP D   SK + RK                             R +G  F          K +KQ ++A                         LK +PAQ RA PHP+APGGWM+ + Q       XXXXXXXXXX       IQP  A+G L E   SM  ADA +LSP
Sbjct:    1 MAPPQRPGSGWLQNANGNKNQPTLAPTPDQSEVTRTAPLPEELIARTEGVSKEEEARRVERAXXXXXXXXXXXXXXXXMCAICCDKLPDLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKSKGETRKPVSLAVTRQRGWRSLFLPVERAFRLCLFARFLGPLFLVVSQRGMKKKVRKQLKRARRRDSRAKNPAAGFVTKTVRVRPKSLKMTPAQQRAAPHPQAPGGWMYVQEQXXXXXXXXXXXXXXXXXXXXXARVIQPALARGALPE---SMTQADAADLSP 298          
BLAST of mRNA_L-elsbetiae_contig490.12831.1 vs. uniprot
Match: D7FGW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW0_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.180e-19
Identity = 56/130 (43.08%), Postives = 67/130 (51.54%), Query Frame = 0
Query:   16 NGSKNQPALAPTPDRSQITRTAPLPAELIARNGGDPEDEEAXXXXXXXXXXXXXXXXEEELCAICYDQLPDLGRGIIACGHVYCFSCIHQWCKTQND---CPGCRLKIRRILKTLSPEDVSKEDRRKERD 142
            N +K  PALAP   +S IT+  P P          PED E                 + ELC IC + LPD+ RGIIACGH +CF CIH W   + D   CP CR    +I KTLSP+D+ KE  R ERD
Sbjct:   12 NNNKRHPALAPFLPKSLITKKIPAP---------HPEDVERTRKAAADDAK------KGELCIICLEALPDIERGIIACGHTFCFGCIHDWASNRGDSALCPSCRFPFNKIKKTLSPKDIEKEKLRNERD 126          
BLAST of mRNA_L-elsbetiae_contig490.12831.1 vs. uniprot
Match: A0A6H5L829_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.370e-18
Identity = 55/128 (42.97%), Postives = 65/128 (50.78%), Query Frame = 0
Query:   18 SKNQPALAPTPDRSQITRTAPLPAELIARNGGDPEDEEAXXXXXXXXXXXXXXXXEEELCAICYDQLPDLGRGIIACGHVYCFSCIHQWCKTQND---CPGCRLKIRRILKTLSPEDVSKEDRRKERD 142
            +K  PALAP   +S IT+  P P          PED E                 + ELC IC + LPD+ RGIIACGH +CF CIH W     D   CP CR+   +I KTLSP+DV KE  R E D
Sbjct:   14 NKRHPALAPVLPKSLITKKIPAP---------HPEDVERTKKAAADDAK------KGELCIICQEALPDIERGIIACGHTFCFGCIHTWSSRSGDSVLCPSCRVPFNKIKKTLSPKDVEKEKLRNEVD 126          
BLAST of mRNA_L-elsbetiae_contig490.12831.1 vs. uniprot
Match: D8LMP5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.170e-12
Identity = 52/139 (37.41%), Postives = 68/139 (48.92%), Query Frame = 0
Query:   77 CAICYDQLPDLGRGIIACGHVYCFSCIHQWCKTQ-NDCPGCRLKIRRILKTLS-PEDVSKEDRRKERDMGKAFKSKKQKRKAXXXXGXVXTQEXXXXXXXXXXXXXXLKPSPAQLRAE---PHPEAPGGWMHAEAQQAA 210
            C IC D LP+  RGI+ CGHV+C  C+ QW K Q N CP CR K+  I KTLS  E + K   RK     +  ++K++            T E               K S  Q+R     PHP+APGG++HA+ Q  A
Sbjct:   57 CPICQDLLPEENRGIVKCGHVFCLKCVLQWVKKQQNSCPTCRAKVCHIKKTLSLAEALEKNANRKPLTKAQLKRTKRKSTIGKPFPKPDITTEKIRVHK---------KVSREQIRQNAMAPHPQAPGGFLHAQEQAEA 186          
BLAST of mRNA_L-elsbetiae_contig490.12831.1 vs. uniprot
Match: A0A6H5JQU9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 9.710e-12
Identity = 47/144 (32.64%), Postives = 69/144 (47.92%), Query Frame = 0
Query:   77 CAICYDQLPDLGRGIIACGHVYCFSCIHQWCKTQ-NDCPGCRLKIRRILKTLSPEDVSKEDRRKERDMGKAFKSKKQKRKAXXXX---------GXVXTQEXXXXXXXXXXXXXXLKPSPAQLRAEPHPEAPGGWMHAEAQQAA 210
            C IC D LP+  RGI+ CGHV+C  C+ QW K Q N CP CR ++  I +TLS  +  +++   +R   +  + K+ KRK+               V  Q+               +    Q    PHP+APGG++HA+ Q  A
Sbjct:   81 CPICQDLLPEENRGILKCGHVFCLKCVLQWVKKQQNSCPTCRAEVCHIKRTLSSAEALEKNA--DRKPPRKAQLKRAKRKSAVGKPSPGDRYSESDVLQQKPDITTEKIRVRKKVSREQIRQNATAPHPQAPGGFLHAQEQTEA 222          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig490.12831.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FGV7_ECTSI3.150e-5452.67Similar to PHD finger family protein, partial n=1 ... [more]
A0A6H5K2A7_9PHAE4.430e-5446.84RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGW0_ECTSI1.180e-1943.08RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L829_9PHAE5.370e-1842.97RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LMP5_ECTSI1.170e-1237.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQU9_9PHAE9.710e-1232.64RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 204..227
NoneNo IPR availableCOILSCoilCoilcoord: 53..76
NoneNo IPR availablePANTHERPTHR46563FAMILY NOT NAMEDcoord: 53..143
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 67..124
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 77..116
e-value: 0.0013
score: 28.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 77..117
e-value: 7.9E-9
score: 35.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 77..117
score: 12.578
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 49..127
e-value: 2.1E-15
score: 57.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 94..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig490contigL-elsbetiae_contig490:11804..15364 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig490.12831.1mRNA_L-elsbetiae_contig490.12831.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig490 10948..16292 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig490.12831.1 ID=prot_L-elsbetiae_contig490.12831.1|Name=mRNA_L-elsbetiae_contig490.12831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=253bp
MDPPRRPGSGWLQNSNGSKNQPALAPTPDRSQITRTAPLPAELIARNGGD
PEDEEAARAAKRAKKAAEERENEEELCAICYDQLPDLGRGIIACGHVYCF
SCIHQWCKTQNDCPGCRLKIRRILKTLSPEDVSKEDRRKERDMGKAFKSK
KQKRKAKRRAGRVKTQEANVVTKQFRIRPKSLKPSPAQLRAEPHPEAPGG
WMHAEAQQAARQRLQQQQQEQQQQRIQPVQAQGVLAEMAESMRLADADEL
SP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS