prot_L-elsbetiae_contig4898.12822.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4898.12822.1
Unique Nameprot_L-elsbetiae_contig4898.12822.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length128
Homology
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: D7FL54_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL54_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 2.330e-76
Identity = 120/128 (93.75%), Postives = 125/128 (97.66%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGAR-VRQQSS 127
            MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEP+IMN FMASLE++QSVGV+TQKQALLYIGTKMR PPKAGAR +RQQSS
Sbjct:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARAMRQQSS 128          
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 7.250e-70
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGAR-VRQQSS 127
            MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEP+IMN FMASLE++QSVGVYTQKQALLYIGTKMR PPKAGAR +RQQSS
Sbjct:  236 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVYTQKQALLYIGTKMRVPPKAGARAMRQQSS 363          
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.400e-44
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAP 115
            MQEQLSKNRVIIE D K N+SA I SSTHERKSRC IH+K+GKVY+ HN+LGDDVPIVV ++AMG  SDQEIVQLVGSEP +++ F  S+EEA +VGV TQKQAL YIG KMR P
Sbjct:  212 MQEQLSKNRVIIELDNKGNVSANIQSSTHERKSRCAIHVKHGKVYLHHNTLGDDVPIVVFMKAMGVESDQEIVQLVGSEPHLVDAFGESIEEALAVGVMTQKQALKYIGRKMRNP 326          
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.520e-42
Identity = 77/123 (62.60%), Postives = 100/123 (81.30%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGARVR 123
            M EQLSKNRVIIE D K N+SAAITSSTH+RKSRCNI  KN K+Y+KHNSLGDD+PIV+IL+AMG   DQEIVQLVG+EPE++++F  SLEE  ++G+++Q QAL +IG ++ A  ++ +  R
Sbjct:   66 MHEQLSKNRVIIELDPKDNVSAAITSSTHDRKSRCNIFFKNNKMYLKHNSLGDDIPIVIILKAMGLECDQEIVQLVGTEPEMLDMFAGSLEEPYNLGIFSQDQALTFIGNRVTAVRESNSTAR 188          
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A2P4YK15_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YK15_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.660e-40
Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = 0
Query:    3 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGA 120
            EQLSKNR+IIE DGK N+ A+ITSSTHERKSR NI +  G+VY+K NS G D+PIV++ R MG  SDQEIV LVGSE +I +V  AS EEA  + V+TQ+QAL YIG+KM A  K GA
Sbjct:  186 EQLSKNRIIIEEDGKHNVCASITSSTHERKSRTNIFLNKGRVYLKSNSFGSDIPIVIVFRGMGVESDQEIVSLVGSESDICDVMSASFEEASDLKVFTQQQALEYIGSKMNALTKIGA 303          
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA)

HSP 1 Score: 148 bits (373), Expect = 8.310e-39
Identity = 77/126 (61.11%), Postives = 95/126 (75.40%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGARVRQQS 126
            MQEQLSKNRVIIE D K + +A ITSSTHERKSRC+I +K G+VY+KHN+LG+D+PI ++ +AMG  SDQEIVQ+VGSEPE    F  SLEE   + + TQKQAL YIG K+RA  + G    Q+S
Sbjct:  179 MQEQLSKNRVIIEVDSKGHTAATITSSTHERKSRCSIFVKAGRVYLKHNTLGEDMPIAIVFKAMGIESDQEIVQMVGSEPETPAQFALSLEEPVVLQILTQKQALTYIGNKIRANQRPGMNHAQKS 304          
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A5A8CMB6_CAFRO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CMB6_CAFRO)

HSP 1 Score: 146 bits (369), Expect = 2.910e-38
Identity = 74/124 (59.68%), Postives = 95/124 (76.61%), Query Frame = 0
Query:    2 QEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGARVRQQ 125
            QEQLSKNR+I+E D K  +SA++TSSTHERKSR  I  K+G++++KHN++GDDVP+V +LRAMG TSDQEIVQLVGSEPE+ +    SLEE   +G+ TQ QAL YIG ++RA   + A V  Q
Sbjct:  468 QEQLSKNRIIVELDPKGAVSASVTSSTHERKSRTVITTKHGRIHLKHNTIGDDVPVVAVLRAMGVTSDQEIVQLVGSEPELQDALAPSLEETLELGILTQAQALEYIGARIRARRASSALVGMQ 591          
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A1V9Z156_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z156_9STRA)

HSP 1 Score: 145 bits (366), Expect = 7.190e-38
Identity = 74/118 (62.71%), Postives = 92/118 (77.97%), Query Frame = 0
Query:    3 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGA 120
            EQLSKNRVI+E DGK N+ A+ITSSTHERKSR NI +  GK+Y+K NS  DD+PIVV+ R MG TSDQEIV LVG EP++M+ F AS+EE+  + ++TQ QAL YI +KM+   KAGA
Sbjct:  208 EQLSKNRVILEEDGKNNVCASITSSTHERKSRTNIFLNKGKIYLKSNSFTDDLPIVVVFRGMGMTSDQEIVSLVGHEPDVMDSFAASIEESSDLKIFTQTQALTYIASKMKI--KAGA 323          
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 143 bits (361), Expect = 3.450e-37
Identity = 76/114 (66.67%), Postives = 91/114 (79.82%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNG-KVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMR 113
            MQEQLSKNRVIIE D K N+SA+ITSSTH+RK R NI +KNG KVY+K+N LGDDVPIVV+L+AMG  SDQEIV +VG  PE+++ F  SLEE   +G+ TQ QAL YIG K+R
Sbjct:  204 MQEQLSKNRVIIEEDNKGNVSASITSSTHDRKGRSNIFVKNGTKVYLKNNLLGDDVPIVVVLKAMGMQSDQEIVCMVGDSPEMLDAFAPSLEEPYHLGICTQAQALRYIGAKIR 317          
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: K3X1L2_GLOUD (DNA-directed RNA polymerase subunit beta n=32 Tax=Oomycota TaxID=4762 RepID=K3X1L2_GLOUD)

HSP 1 Score: 142 bits (359), Expect = 6.410e-37
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 0
Query:    3 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGA 120
            EQLSKNRVIIE D K+N+ A+ITSSTHERKSR NI +   +VY+K NS G D+PIV++ R MG  SDQEIV L+GSEP++ +   AS EEA  + V+TQ QAL YIG+KM A  K GA
Sbjct:  196 EQLSKNRVIIEEDAKQNVCASITSSTHERKSRTNIFINKNRVYLKSNSFGSDIPIVIVFRGMGMESDQEIVSLIGSEPDVTDALTASFEEASDLKVFTQLQALEYIGSKMNAVTKVGA 313          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL54_ECTSI2.330e-7693.75DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JAF8_9PHAE7.250e-7094.53DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA3.400e-4473.04DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S3H3I2_9STRA3.520e-4262.60DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A2P4YK15_9STRA1.660e-4063.56DNA-directed RNA polymerase (Fragment) n=2 Tax=Phy... [more]
A0A7S2WH87_9STRA8.310e-3961.11DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
A0A5A8CMB6_CAFRO2.910e-3859.68DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
A0A1V9Z156_9STRA7.190e-3862.71DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
I2CNY0_NANGC3.450e-3766.67DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
K3X1L2_GLOUD6.410e-3761.02DNA-directed RNA polymerase subunit beta n=32 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 7..124
e-value: 1.6E-18
score: 67.0
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10coord: 8..127
e-value: 1.4E-31
score: 111.4
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..117
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 1..117
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4898contigL-elsbetiae_contig4898:7282..8934 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4898.12822.1mRNA_L-elsbetiae_contig4898.12822.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4898 7282..8934 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4898.12822.1 ID=prot_L-elsbetiae_contig4898.12822.1|Name=mRNA_L-elsbetiae_contig4898.12822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNS
LGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYT
QKQALLYIGTKMRAPPKAGARVRQQSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007642RNA_pol_Rpb2_2
IPR037034RNA_pol_Rpb2_2_sf
IPR015712DNA-dir_RNA_pol_su2