prot_L-elsbetiae_contig4898.12821.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4898.12821.1
Unique Nameprot_L-elsbetiae_contig4898.12821.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length157
Homology
BLAST of mRNA_L-elsbetiae_contig4898.12821.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 7.970e-98
Identity = 152/156 (97.44%), Postives = 155/156 (99.36%), Query Frame = 0
Query:    1 MTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSATITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            MTVIDP+TVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGS TIT+GFTHAIS+GNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  409 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 564          
BLAST of mRNA_L-elsbetiae_contig4898.12821.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 259 bits (661), Expect = 1.970e-77
Identity = 127/155 (81.94%), Postives = 137/155 (88.39%), Query Frame = 0
Query:    2 TVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSATITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            TV+DP+++DDKDYYGNKRLE AGQLISLLFEDLFKRFN +LKR AD  L+K N A  +DI   L GS  IT GF HAISTGNWV+KRFK+DRQGVTQVLSRLS+IS LGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  382 TVLDPSSLDDKDYYGNKRLESAGQLISLLFEDLFKRFNGDLKRYADTCLAKQNHATPWDISGMLAGSMNITQGFIHAISTGNWVVKRFKMDRQGVTQVLSRLSYISCLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 536          
BLAST of mRNA_L-elsbetiae_contig4898.12821.1 vs. uniprot
Match: A0A482SPL4_9ARCH (DNA-directed RNA polymerase subunit beta n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPL4_9ARCH)

HSP 1 Score: 254 bits (649), Expect = 5.850e-77
Identity = 124/155 (80.00%), Postives = 139/155 (89.68%), Query Frame = 0
Query:    2 TVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSATITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            TV D + +DDKDYYGNKR+ELAG L+SLLFEDLFKRFNS+LKR ADMVLSKPNRA  FDI KF+ G  TIT GF HAISTG+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  132 TVQDRSLLDDKDYYGNKRIELAGSLLSLLFEDLFKRFNSDLKRQADMVLSKPNRAGGFDIVKFIRGD-TITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 285          
BLAST of mRNA_L-elsbetiae_contig4898.12821.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 251 bits (641), Expect = 4.680e-75
Identity = 122/155 (78.71%), Postives = 137/155 (88.39%), Query Frame = 0
Query:    2 TVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSATITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            TV D + +DDKDYYGNKRLELAG LISLLFEDLFKRFNS+LKR  DM+LSKPNRA  FD+ KF+    TIT GF HAISTG+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  237 TVRDRSLLDDKDYYGNKRLELAGSLISLLFEDLFKRFNSDLKRQVDMILSKPNRAGGFDVMKFMRAD-TITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 390          
BLAST of mRNA_L-elsbetiae_contig4898.12821.1 vs. uniprot
Match: A0A7S2WKY6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKY6_9STRA)

HSP 1 Score: 234 bits (596), Expect = 7.000e-75
Identity = 116/147 (78.91%), Postives = 129/147 (87.76%), Query Frame = 0
Query:   10 DDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSATITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            DDKDYYGNKRLELAG L+SLLFEDLFK FN +LKR AD VLSK NRA AFD+ K +  S TIT G   AISTGNWVLKRF++DR GVTQVLSRLS++S+LGMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   88 DDKDYYGNKRLELAGNLLSLLFEDLFKHFNRDLKRQADQVLSKANRAQAFDVIKCIR-SDTITMGMVMAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 233          
BLAST of mRNA_L-elsbetiae_contig4898.12821.1 vs. uniprot
Match: A0A7S3PBU7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBU7_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.740e-74
Identity = 113/148 (76.35%), Postives = 132/148 (89.19%), Query Frame = 0
Query:    9 VDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSATITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            +DDKDYYGNKRLELAG L+SLLFEDLFK F+ +LKR AD+VLSKPN A AFD+ K +    TITNG  +AI+TGNWVLKRF++DR GVTQVLSRLS++S+LGMMTR++SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:  105 LDDKDYYGNKRLELAGNLLSLLFEDLFKTFSKDLKRQADLVLSKPNLAQAFDVTKTIRPD-TITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 251          
BLAST of mRNA_L-elsbetiae_contig4898.12821.1 vs. uniprot
Match: A0A2P4YIY6_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A2P4YIY6_9STRA)

HSP 1 Score: 246 bits (629), Expect = 2.720e-74
Identity = 120/152 (78.95%), Postives = 136/152 (89.47%), Query Frame = 0
Query:    5 DPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSATITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            D T +DDKDYYGNKRLELAGQL+SLLFEDLFKRFNS+LKR ADMVLSKPNRA+ FDI K +  + TIT GF HA+STGNW LKRF++DR GVT VLSRLS++S+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   41 DRTRLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPNRASVFDILKCIR-TDTITQGFYHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 191          
BLAST of mRNA_L-elsbetiae_contig4898.12821.1 vs. uniprot
Match: A0A2G8KFE2_STIJA (DNA-directed RNA polymerase n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KFE2_STIJA)

HSP 1 Score: 232 bits (592), Expect = 2.830e-74
Identity = 113/152 (74.34%), Postives = 131/152 (86.18%), Query Frame = 0
Query:    5 DPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSATITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            D   VDD+DYYGNKRLELAGQLISLLFEDLFK+FNSELK+ AD ++ KP+RAA FD+ K +     ITNG   AISTGNW LKRFK++R GVTQ+LSRLS+IS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   81 DSFKVDDRDYYGNKRLELAGQLISLLFEDLFKKFNSELKKIADQIIPKPSRAALFDVVKHMRQDK-ITNGLNTAISTGNWSLKRFKMERAGVTQILSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 231          
BLAST of mRNA_L-elsbetiae_contig4898.12821.1 vs. uniprot
Match: M4C4J1_HYAAE (DNA-directed RNA polymerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4J1_HYAAE)

HSP 1 Score: 246 bits (628), Expect = 3.540e-74
Identity = 120/152 (78.95%), Postives = 136/152 (89.47%), Query Frame = 0
Query:    5 DPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSATITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            D T +DDKDYYGNKRLELAGQL+SLLFEDLFKRFNS+LKR ADMVLSKPNRA+ FDI K +  + TIT GF HA+STGNW LKRF++DR GVT VLSRLS++S+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:  350 DRTRLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPNRASVFDIIKCVR-TDTITQGFFHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 500          
BLAST of mRNA_L-elsbetiae_contig4898.12821.1 vs. uniprot
Match: A0A822DRV6_9NEOB (DNA-directed RNA polymerase n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822DRV6_9NEOB)

HSP 1 Score: 229 bits (585), Expect = 3.970e-74
Identity = 114/148 (77.03%), Postives = 130/148 (87.84%), Query Frame = 0
Query:    9 VDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSATITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            VDD+DYYGNKRLELAGQL+SLLFEDLFK+FNSE+K+ AD V+ K  RAA FD+ K +     ITNG  +AISTGNW LKRFK+DRQGVTQVLSRLSFIS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   14 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQ-ITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 159          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4898.12821.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAF8_9PHAE7.970e-9897.44DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA1.970e-7781.94DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A482SPL4_9ARCH5.850e-7780.00DNA-directed RNA polymerase subunit beta n=1 Tax=a... [more]
A0A7S3H3I2_9STRA4.680e-7578.71DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S2WKY6_9STRA7.000e-7578.91DNA-directed RNA polymerase (Fragment) n=2 Tax=Euc... [more]
A0A7S3PBU7_9STRA1.740e-7476.35DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp... [more]
A0A2P4YIY6_9STRA2.720e-7478.95DNA-directed RNA polymerase subunit beta (Fragment... [more]
A0A2G8KFE2_STIJA2.830e-7474.34DNA-directed RNA polymerase n=1 Tax=Stichopus japo... [more]
M4C4J1_HYAAE3.540e-7478.95DNA-directed RNA polymerase n=1 Tax=Hyaloperonospo... [more]
A0A822DRV6_9NEOB3.970e-7477.03DNA-directed RNA polymerase n=1 Tax=Ranitomeya imi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 98..156
e-value: 1.9E-19
score: 69.6
NoneNo IPR availableGENE3D3.90.1100.10coord: 2..157
e-value: 7.9E-35
score: 122.5
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 3..156
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 3..156
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 3..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4898contigL-elsbetiae_contig4898:2855..5534 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4898.12821.1mRNA_L-elsbetiae_contig4898.12821.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4898 2855..5534 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4898.12821.1 ID=prot_L-elsbetiae_contig4898.12821.1|Name=mRNA_L-elsbetiae_contig4898.12821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
MTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVL
SKPNRAAAFDIGKFLEGSATITNGFTHAISTGNWVLKRFKVDRQGVTQVL
SRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESC
GLVKNLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007645RNA_pol_Rpb2_3
IPR015712DNA-dir_RNA_pol_su2