prot_L-elsbetiae_contig4884.12802.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4884.12802.1
Unique Nameprot_L-elsbetiae_contig4884.12802.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length69
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig4884.12802.1 vs. uniprot
Match: A0A7S1HSR6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HSR6_9EUGL)

HSP 1 Score: 50.1 bits (118), Expect = 1.610e-5
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 0 
Query:    1 MEEKGIALDVITYSSAIKACGEGGQWQLALDLLLEM 36
            M +KGIAL+ ITYSSAI AC + GQWQ+AL L  EM
Sbjct:    1 MRDKGIALNTITYSSAISACEKCGQWQVALRLFNEM 36
[Close]
BLAST of mRNA_L-elsbetiae_contig4884.12802.1 vs. uniprot
Match: A0A7S1HSM5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HSM5_9EUGL)

HSP 1 Score: 50.1 bits (118), Expect = 2.230e-5
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 0 
Query:    1 MEEKGIALDVITYSSAIKACGEGGQWQLALDLLLEM 36
            M +KGIAL+ ITYSSAI AC + GQWQ+AL L  EM
Sbjct:    1 MRDKGIALNTITYSSAISACEKCGQWQVALRLFNEM 36
[Close]
BLAST of mRNA_L-elsbetiae_contig4884.12802.1 vs. uniprot
Match: K8YNC8_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNC8_NANGC)

HSP 1 Score: 48.1 bits (113), Expect = 8.910e-5
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0 
Query:    5 GIALDVITYSSAIKACGEGGQWQLALDLLLEM 36
            GIA DV+TYS+A+ ACGE G+W+ AL LL EM
Sbjct:   83 GIAPDVVTYSTALAACGEAGKWEKALSLLKEM 114
[Close]
BLAST of mRNA_L-elsbetiae_contig4884.12802.1 vs. uniprot
Match: A0A7S2AII3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AII3_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 9.150e-5
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0 
Query:    5 GIALDVITYSSAIKACGEGGQWQLALDLLLEMKK 38
            GI  D  T+SSAI AC +GGQW+ ALDLL+EM++
Sbjct:    1 GIIPDSFTFSSAISACEKGGQWEQALDLLVEMRR 34
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4884.12802.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1HSR6_9EUGL1.610e-566.67Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1HSM5_9EUGL2.230e-566.67Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
K8YNC8_NANGC8.910e-565.63Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2AII3_9STRA9.150e-561.76Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 1..58
e-value: 1.0E-14
score: 54.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..45
e-value: 4.2E-9
score: 34.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..68
score: 5.305
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 12.288
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..64
e-value: 1.4E-17
score: 66.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4884contigL-elsbetiae_contig4884:11434..11640 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4884.12802.1mRNA_L-elsbetiae_contig4884.12802.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4884 11340..11648 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4884.12802.1 ID=prot_L-elsbetiae_contig4884.12802.1|Name=mRNA_L-elsbetiae_contig4884.12802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
MEEKGIALDVITYSSAIKACGEGGQWQLALDLLLEMKKKGIAPNAIIYNS
AIKACGERGSKLSHYSER*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf