prot_L-elsbetiae_contig4872.12786.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4872.12786.1
Unique Nameprot_L-elsbetiae_contig4872.12786.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length131
Homology
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BLAST of mRNA_L-elsbetiae_contig4872.12786.1 vs. uniprot
Match: A0A6H5JUF8_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.890e-8
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 0 
Query:   18 MAQRELQGRLQVAEQQVRMYREAMEHLIAAPPTGPPKQAASRTTPAAEAATAAGRN 73
            MA RELQGRLQ+AEQQVRMYREAMEHLIAAP    P  + SR +P +  A  A  N
Sbjct:    1 MAYRELQGRLQLAEQQVRMYREAMEHLIAAPSAAYPAASQSRASPISTTAGVAQEN 56
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4872.12786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUF8_9PHAE7.890e-864.29APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 20..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4872contigL-elsbetiae_contig4872:8144..12254 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4872.12786.1mRNA_L-elsbetiae_contig4872.12786.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4872 8144..12254 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4872.12786.1 ID=prot_L-elsbetiae_contig4872.12786.1|Name=mRNA_L-elsbetiae_contig4872.12786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
RGEGANLSSEIEAPATDMAQRELQGRLQVAEQQVRMYREAMEHLIAAPPT
GPPKQAASRTTPAAEAATAAGRNGSFREISGGEKTASGSAGGSAGGDAEP
AGTGGGGHDRAPDVGGVASRPARNCSDGDTG
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