prot_L-elsbetiae_contig484.12740.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig484.12740.1
Unique Nameprot_L-elsbetiae_contig484.12740.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length520
Homology
BLAST of mRNA_L-elsbetiae_contig484.12740.1 vs. uniprot
Match: D7FVS6_ECTSI (G-rich sequence factor 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS6_ECTSI)

HSP 1 Score: 567 bits (1461), Expect = 6.840e-197
Identity = 315/522 (60.34%), Postives = 387/522 (74.14%), Query Frame = 0
Query:    1 MSSLLSVIARRVPRAAGVMAGSGVG--ATRARSVRMLSAGPLSGLSRPASGSQPLSALAPGGSTSAPGFTHLQQQQQQCRSLSIQSEDNQESTEELGAAEVEGAAAEAAVDVGGXXXXXXXXXXVGGSATSTSDALYLVQVDGLPFNMPQEEIEQWFADAGCAATSVTVPLWSEKSMRAGQNKGKAYIHLDNEEDTQAVLSLSGRSIGQRWISVSRLAIPLEETRQVAIKGLSGFSSDDVATIFEEAVGAAPVEVNVIENPNRARGLAFVKFETPELARASLALDGSNIHNQWVDVSLNVTKTSSNESRLER-MKSPFGPDVPDALVVALKGLPFTLLEDEIRAFLLNNDIGEEDIVATEVPKYNNTQFNTGTAFFHLRTEEAVAVALTLKGTYIGDRWVDVSRWNERGGGHKKADGSSSKNSLAETRERVPAALRQKHPSLPVVAISGLPFNKTQDEVTDFLETNGVPRSAMVEMEMPLFLQTERNTGSCWVVMDDEESYGNLMQLNGAVMDERWLTVNDA 519
            M+SLLS IAR  P+AA  MAGSG G  ATR R++R L+AGPL   SRP+    P SAL+P  + +AP    + QQQ Q RSLSIQSED   + EE GA                XXXXX     V      + + LYL+QVDGLPF M  EE+EQWF +AGC+   VTVPLW E+S+RAGQNKGKAY+H   EED +  LSLSGRSIG+RWI++SRLA PLEE   + IKGL GF   +V  IFEEAVGAAPVEV ++ENPNR+RGLAF+KFE P+LARA+L LDG+NI NQWVDVSL+V K SSNE RL    + PFGPDVPD +VV LKGLPF+LLEDEI+AF+LN++I E++IVA  VPK+N TQFNTG A  H +++E+VA AL LKGT+IG+RWVDVSRWNER   +K     S ++ + ETR  V  +L++KHPSLPVV+ISGLPF+KT++EV +FLE +GVPRSAM+E+EMPLFLQT+ NTG+CWVV+ DE +Y  LM+LNGA +D+RWLTV DA
Sbjct:    1 MTSLLSAIARGTPKAARFMAGSGAGLRATRIRTLRTLTAGPLPADSRPS----PSSALSP--APAAP----INQQQLQRRSLSIQSEDT--NPEEAGAXXXXXXX----XXXXXXXXXXVSEEEVTPPPAESPEPLYLIQVDGLPFTMATEELEQWFEEAGCSPPKVTVPLWPERSIRAGQNKGKAYLHFSGEEDVRKALSLSGRSIGERWINISRLAQPLEEACTITIKGLQGFPESEVVAIFEEAVGAAPVEVKIVENPNRSRGLAFIKFEMPDLARAALHLDGTNIQNQWVDVSLHVMKQSSNEFRLGTGSQPPFGPDVPDEMVVMLKGLPFSLLEDEIKAFILNHEIAEDEIVAINVPKFNETQFNTGIAMIHFKSDESVARALELKGTHIGERWVDVSRWNER---NKPNQRKSHRDQMEETRSAVKTSLKEKHPSLPVVSISGLPFHKTEEEVIEFLEASGVPRSAMLEVEMPLFLQTQNNTGTCWVVISDEGAYETLMELNGATLDDRWLTVVDA 503          
BLAST of mRNA_L-elsbetiae_contig484.12740.1 vs. uniprot
Match: A0A6H5KVQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ1_9PHAE)

HSP 1 Score: 532 bits (1371), Expect = 1.730e-183
Identity = 300/497 (60.36%), Postives = 365/497 (73.44%), Query Frame = 0
Query:    1 MSSLLSVIARRVPRAAGVMAGSGVG--ATRARSVRMLSAGPLSGLSRPASGSQPLSALAPGGSTSAPGFTHLQQQQQQCRSLSIQSEDNQESTEELGAAEVEGAAAEAAVDVGGXXXXXXXXXXVGGSATSTSDALYLVQVDGLPFNMPQEEIEQWFADAGCAATSVTVPLWSEKSMRAGQNKGKAYIHLDNEEDTQAVLSLSGRSIGQRWISVSRLAIPLEETRQVAIKGLSGFSSDDVATIFEEAVGAAPVEVNVIENPNRARGLAFVKFETPELARASLALDGSNIHNQWVDVSLNVTKTSSNESRL-ERMKSPFGPDVPDALVVALKGLPFTLLEDEIRAFLLNNDIGEEDIVATEVPKYNNTQFNTGTAFFHLRTEEAVAVALTLKGTYIGDRWVDVSRWNERGGGHKKADGSSSKNSLAETRERVPAALRQKHPSLPVVAISGLPFNKTQDEVTDFLETNGVPRSAMVEMEMPLFLQTERNTGSCWVVMDD 494
            M+SLLS IAR  P+AA  MAG G G  ATR R++R L+AGPLS  SRP+  S    AL+P  + +AP  TH  QQQ Q R LSIQSED   + +E GA       A AA   G             GS     + LYL+QV+GLPF M  EEIEQWF +A C+   V VPLW E+S+RAGQNKG AY++  +EEDTQ  LSLSGRSIG RWI++SRL  PLEE+  V IKGL GF   +V  IFEEAVGAAPVEVN+IENPNR+RGLAFVKFETP+LARA+L LDGSNI NQWVDVSL+V K +S E RL    + PFGPDVPD +VV LKGLPF+LL+DEI+AF+LN+DI E++IVA  VPK+N TQFNTG A  H +++E+VA AL LKGTYIG+RWVDVSRWN+R   ++K    S +  + ETR  V A+L++KHPSLPVV+ISGLPF+KT++EV +FLE +GVPRSAM+E+EMPLFLQT+ NTG+CWVV+ D
Sbjct:    1 MTSLLSTIARGTPKAARFMAGGGAGLRATRIRTLRTLTAGPLSADSRPSLSS----ALSP--APAAP--TH--QQQLQRRFLSIQSEDI--NPQEAGATAAAAGEAPAATGEGEEVSEEEVTPPPAGSP----EPLYLIQVNGLPFTMATEEIEQWFDEAACSPAKVVVPLWPERSIRAGQNKGMAYLYFSSEEDTQKALSLSGRSIGDRWINISRLVQPLEESCTVTIKGLHGFPEGEVVAIFEEAVGAAPVEVNIIENPNRSRGLAFVKFETPDLARAALHLDGSNIQNQWVDVSLHVMKQTSKEFRLGSGSQPPFGPDVPDEMVVMLKGLPFSLLDDEIKAFILNHDIAEDEIVAMSVPKFNETQFNTGIAMIHFKSDESVARALELKGTYIGERWVDVSRWNDRNKPNQK---KSHRQQMEETRSAVQASLKEKHPSLPVVSISGLPFHKTEEEVIEFLEASGVPRSAMLEVEMPLFLQTQNNTGACWVVISD 478          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig484.12740.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVS6_ECTSI6.840e-19760.34G-rich sequence factor 1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KVQ1_9PHAE1.730e-18360.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 324..400
e-value: 0.013
score: 23.4
coord: 136..213
e-value: 0.014
score: 23.1
coord: 441..517
e-value: 0.03
score: 20.2
coord: 224..295
e-value: 0.019
score: 21.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 234..289
e-value: 2.6E-5
score: 24.0
coord: 139..208
e-value: 6.2E-5
score: 22.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 223..299
score: 10.633
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 135..217
score: 9.439
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 440..519
score: 8.757
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 440..519
e-value: 1.2E-8
score: 36.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 135..216
e-value: 1.1E-12
score: 49.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 318..406
e-value: 4.6E-10
score: 41.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 217..307
e-value: 1.4E-7
score: 33.6
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 234..516
coord: 132..300
NoneNo IPR availablePANTHERPTHR13976:SF25RNA-BINDING PROTEIN FUSILLIcoord: 132..300
NoneNo IPR availablePANTHERPTHR13976:SF25RNA-BINDING PROTEIN FUSILLIcoord: 234..516
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 433..517
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 313..408
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 137..214
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 222..304

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig484contigL-elsbetiae_contig484:15944..27037 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig484.12740.1mRNA_L-elsbetiae_contig484.12740.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig484 15944..27038 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig484.12740.1 ID=prot_L-elsbetiae_contig484.12740.1|Name=mRNA_L-elsbetiae_contig484.12740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=520bp
MSSLLSVIARRVPRAAGVMAGSGVGATRARSVRMLSAGPLSGLSRPASGS
QPLSALAPGGSTSAPGFTHLQQQQQQCRSLSIQSEDNQESTEELGAAEVE
GAAAEAAVDVGGAAQAAAAEEEVGGSATSTSDALYLVQVDGLPFNMPQEE
IEQWFADAGCAATSVTVPLWSEKSMRAGQNKGKAYIHLDNEEDTQAVLSL
SGRSIGQRWISVSRLAIPLEETRQVAIKGLSGFSSDDVATIFEEAVGAAP
VEVNVIENPNRARGLAFVKFETPELARASLALDGSNIHNQWVDVSLNVTK
TSSNESRLERMKSPFGPDVPDALVVALKGLPFTLLEDEIRAFLLNNDIGE
EDIVATEVPKYNNTQFNTGTAFFHLRTEEAVAVALTLKGTYIGDRWVDVS
RWNERGGGHKKADGSSSKNSLAETRERVPAALRQKHPSLPVVAISGLPFN
KTQDEVTDFLETNGVPRSAMVEMEMPLFLQTERNTGSCWVVMDDEESYGN
LMQLNGAVMDERWLTVNDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf