prot_L-elsbetiae_contig21120.6433.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig21120.6433.1
Unique Name	prot_L-elsbetiae_contig21120.6433.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	142

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig21120.6433.1 vs. uniprot
Match: D8LKN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 8.420e-16
Identity = 47/83 (56.63%), Postives = 57/83 (68.67%), Query Frame = 0

Query:    7 SVQADPIEYGCSCDD-GYISEDSVGSPSSVRKQVLIGFFIAMAMLGVVTVGFLLWTATKQRYLSTAAQATRRAKLRLRLIYSA 88
            S Q D I Y CSCDD G+ S DS G+PS V ++ L+  +I +A+ G  TVGFL W A KQ +L   AQATRRA LRLRLI+SA
Sbjct:   19 SEQDDLIGYECSCDDDGFTSMDSFGNPSCVLRRALVAGYIIIAVCGSSTVGFLAWNALKQSHLPRTAQATRRAMLRLRLIWSA 101

[Close]

BLAST of mRNA_L-elsbetiae_contig21120.6433.1 vs. uniprot
Match: D7FP23_ECTSI (DUF305 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP23_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 7.220e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 0

Query:   15 YGCSCDDGYISEDSVGSPSSVRKQVLIGFFIAMAMLGVVTVGFLLWTATKQRYLSTAAQATRRAKLRLRLI 85
            YGC C+ G +  DS+G+PS VRK  LIG +  +  +  + V F+LW A     L  AAQATRRA+LR+RL+
Sbjct:  372 YGCWCNPGLVETDSLGNPSCVRKPSLIGLYAVVGAIAGLAVAFVLWKARAHWLLPEAAQATRRARLRMRLV 442

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig21120.6433.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig21120.6433.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LKN9_ECTSI	8.420e-16	56.63	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FP23_ECTSI	7.220e-11	47.89	DUF305 domain-containing protein n=1 Tax=Ectocarpu...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 61..141
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 39..60
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..38
None	No IPR available	TMHMM	TMhelix		coord: 39..61

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig21120	contig	L-elsbetiae_contig21120:1360..2021 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig21120.6433.1	mRNA_L-elsbetiae_contig21120.6433.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig21120 1360..2021 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig21120.6433.1 ID=prot_L-elsbetiae_contig21120.6433.1|Name=mRNA_L-elsbetiae_contig21120.6433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
VESFCVSVQADPIEYGCSCDDGYISEDSVGSPSSVRKQVLIGFFIAMAML
GVVTVGFLLWTATKQRYLSTAAQATRRAKLRLRLIYSARCGGLAVTPGCA
RLLKSCMFRDHRRILARSESLHISILGSWHKGCGKAAGGSK*