prot_L-elsbetiae_contig21119.6425.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig21119.6425.1
Unique Nameprot_L-elsbetiae_contig21119.6425.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length176
Homology
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BLAST of mRNA_L-elsbetiae_contig21119.6425.1 vs. uniprot
Match: E6ZEQ5_ECTSI (Ribosomal protein S2 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ5_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.390e-14
Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = 0 
Query:    7 KHKSLFQYLIKKKAYIGP----PLPYLDCSLYPFLHGKINHFSIYDLQQSLFILIQVLKLVEKLISDGGKILFVGPPKKFIKSIHYIPGISVCSKCVWDIRSSTNIDLIIIYNVNSKILYEAKQKGVPIVGFGGLNFKYVDYPVSLNFNDKNLFKWHIYLLVQAIIRG 170
            KH  LF   I    Y+ P        +  +L+PFL GK N +S YDL++SL+ +   +++++ +IS  GKILF+G              I+        I  S + DL+++ +V  + L EA +K + +VG G      + YP +LN     L  W    +  + ++G
Sbjct:    5 KHSRLFSLFIGSSGYLVPFPRNEYSQISKTLHPFLLGKRNIYSFYDLEKSLYGIRATIEVLKNIISSEGKILFIGDDVSMQSRFGQDSNINFLKWERGSITKSKDADLVLLTSVEKENLVEAHRKCLLLVGVGSSTMSRISYPFNLNIESPFLSDWFFGTVYTSCVQG 172
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BLAST of mRNA_L-elsbetiae_contig21119.6425.1 vs. uniprot
Match: A0A8F0FDE8_9PHAE (Ribosomal protein S2 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0FDE8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.240e-11
Identity = 48/168 (28.57%), Postives = 86/168 (51.19%), Query Frame = 0 
Query:   11 LFQYLIKKKAYIGP-PLPY---LDCSLYPFLHGKINHFSIYDLQQSLFILIQVLKLVEKLISDGGKILFVGPPKKFIKSIHYIPGISVCSKCV-WD---IRSSTNIDLIIIYNVNSKILYEAKQKGVPIVGFGGLNFKYVDYPVSLNFNDKNLFKWHIYLLVQAIIRG 170
            L  + I    Y+ P PL     +  +++PFL GK + +S Y+L++SL+ +   L++++ +I++ GKI FV     F K +   P I+    C+ W+   +  S + DL  + ++  + L EA +KG+ +VG G      + YP +LN     L  W    +  + +RG
Sbjct:    9 LLSFFIGSSGYLVPRPLNENIKISKTMHPFLLGKRDIYSFYNLEKSLYGIRATLEVLKNIIANEGKITFVSNSPIFKKCLSLDPQIT----CIRWERSYLAKSKDADLFFLSDIQKENLVEAHRKGLLLVGVGSPTMSKIAYPFNLNVRSPLLADWFFSAIYTSCVRG 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21119.6425.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
E6ZEQ5_ECTSI4.390e-1428.57Ribosomal protein S2 n=2 Tax=Ectocarpus siliculosu... [more]
A0A8F0FDE8_9PHAE1.240e-1128.57Ribosomal protein S2 n=1 Tax=Pseudochorda nagaii T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 15..82
e-value: 1.4E-7
score: 30.9
NoneNo IPR availableGENE3D3.40.50.10490coord: 6..172
e-value: 1.1E-12
score: 49.5
IPR023591Ribosomal protein S2, flavodoxin-like domain superfamilySUPERFAMILY52313Ribosomal protein S2coord: 15..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21119contigL-elsbetiae_contig21119:1472..1999 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21119.6425.1mRNA_L-elsbetiae_contig21119.6425.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig21119 1472..1999 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig21119.6425.1 ID=prot_L-elsbetiae_contig21119.6425.1|Name=mRNA_L-elsbetiae_contig21119.6425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MKTKFIKHKSLFQYLIKKKAYIGPPLPYLDCSLYPFLHGKINHFSIYDLQ
QSLFILIQVLKLVEKLISDGGKILFVGPPKKFIKSIHYIPGISVCSKCVW
DIRSSTNIDLIIIYNVNSKILYEAKQKGVPIVGFGGLNFKYVDYPVSLNF
NDKNLFKWHIYLLVQAIIRGFNIRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001865Ribosomal_S2
IPR023591Ribosomal_S2_flav_dom_sf