prot_L-elsbetiae_contig2109.6393.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig2109.6393.1
Unique Nameprot_L-elsbetiae_contig2109.6393.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length438
Homology
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BLAST of mRNA_L-elsbetiae_contig2109.6393.1 vs. uniprot
Match: A0A6H5JE62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE62_9PHAE)

HSP 1 Score: 438 bits (1127), Expect = 2.490e-147
Identity = 267/440 (60.68%), Postives = 288/440 (65.45%), Query Frame = 0 
Query:    1 MGDEGGVGGPKGDGRGKEWTVDLCCRRLSLLHRKLRQIKSLQAQQARDPDSLDDAQRIKLGRKHFLVTEISELEALRRDLRERDWESGTSSAAPKKKESKSRLPLGPFAGVNAAG--HDGLPQQQEEEDEASRPEEDDGAEYTRDGLRLASPKRPVRPPSPVAAAPAEQQPVASKAEPTGGRQVAPPSVLEDADLFSGXXXXXXXXXXXMADLTKTSVDGQXXXXXXXXXXXXXXXXXXXXXGHEDMEGQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAREEARPMVDAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGAVAKDPGIKVDLLADIVVANGVAVTFPGKIDNSDETRKPREDEGKRTGPIPKAEKNTWKQKTKYRWSMDEGLLAKRTRRAANAKAFEKKRRSGGG-YDDW 437
            M DEGGVGGPKGDGRGKEWTVDLCC+RLSLLHRKLRQ+KSLQAQQAR PDSLDDAQR+KLGRK  L+ EISELEALRRDLR+++WES  +SA PK+ + KSRLP GPFA  NAAG  HD    Q         PEEDDGAEYTRDGLRLASPKR +                                 L DADLFS            M  L K S+DGQ                     G ED  G                                          E REEARPMV+A AGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNG VA+DPGIKVDLL DIVVANGVAVTFPGKIDNSDETR+PRED GKRTGPIPKAEKNTWKQKTKYRW MD+GLLAKRTRRAANAKAF+KKR++GGG +D+W
Sbjct:  142 MADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHRKLRQVKSLQAQQARAPDSLDDAQRVKLGRKQTLLAEISELEALRRDLRQKEWESDGASAGPKENK-KSRLPPGPFAAANAAGGGHDTRQHQ---------PEEDDGAEYTRDGLRLASPKRRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGDADLFSDGGGGGVLA---MEALIKPSMDGQDWEKEEGDGGFNWEE------GFEDAGGS----------------------------------------SEGREEARPMVEALAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGVAVTFPGKIDNSDETRRPREDAGKRTGPIPKAEKNTWKQKTKYRWGMDDGLLAKRTRRAANAKAFDKKRQTGGGGFDNW 522
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BLAST of mRNA_L-elsbetiae_contig2109.6393.1 vs. uniprot
Match: D7FYC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC7_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 5.460e-119
Identity = 227/387 (58.66%), Postives = 242/387 (62.53%), Query Frame = 0 
Query:    1 MGDEGGVGGPKGDGRGKEWTVDLCCRRLSLLHRKLRQIKSLQAQQARDPDSLDDAQRIKLGRKHFLVTEISELEALRRDLRERDWESGTSSAAPKKKESKSRLPLGPFAGVNAAG--HDGLPQQQEEEDEASRPEEDDGAEYTRDGLRLASPKRPVRPPSPVAAAPAEQQPVASK--AEPTGGRQVAPPSVLEDADLFSGXXXXXXXXXXXMADLTKTSVDGQXXXXXXXXXXXXXXXXXXXXXGHEDMEGQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAREEARPMVDAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGAVAKDPGIKVDLLADIVVANGVAVTFPGKIDNSDETRKPREDEGK 383
            M DEGGVGGPKGDGRGKEWTVDLCC+RLSLLHRKLRQ+KSLQAQQARDPDSLDDAQR+KLGRK  L+TEISELEALRRDLR+++WES  +SA PK  E KSRLP GPFA  NAAG  HD    Q EE         DDGAEYTRDGLRLASPKR V+                S+  A   G     P   L DADLFS            M  L K+S+DGQ                     G ED  G                                          E REEARPMV+APAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNG VA+DPGIKVDLL DIVVANGVAVTFPG IDNSDETR+PRED GK
Sbjct:    1 MADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHRKLRQVKSLQAQQARDPDSLDDAQRVKLGRKQTLLTEISELEALRRDLRQKEWESDGASAGPK--EKKSRLPPGPFAAANAAGGGHDTRQHQLEE---------DDGAEYTRDGLRLASPKRQVQXXXXXXXXXXXXXXXXSRPSAGTPGAAAAVPSPSLGDADLFSDGDGGGVSA---MEALIKSSMDGQDWEKEEGDGGFNWEE------GFEDAGGS----------------------------------------SEGREEARPMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGVAVTFPGTIDNSDETRRPREDAGK 327
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BLAST of mRNA_L-elsbetiae_contig2109.6393.1 vs. uniprot
Match: A0A835YSP6_9STRA (S4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 8.870e-24
Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 0 
Query:  305 GYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGAVAKDPGIKVDLLADIVVANGVAVTFPGKIDNSDETRKPREDEG--------KRTGPIPKAEK-NTWKQKTKYRWSMDEGLLAKRTR 416
            G PK+L  ++S+CRVS + TCE+LV +GRVTVNG V  +   KVD+L D ++ANG  V  P K DN+     P  DEG        KRTGP+PK+EK  TWKQ TKY W +D GL+A++ R
Sbjct:  166 GLPKKLGTVLSYCRVSTRETCEMLVAIGRVTVNGEVVTNADKKVDILNDEIIANGARVEIPDKFDNTFSA--PPVDEGEARPRGGKKRTGPLPKSEKPKTWKQLTKYTWKVDGGLMARKVR 284
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BLAST of mRNA_L-elsbetiae_contig2109.6393.1 vs. uniprot
Match: A0A4D9D3K9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3K9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.360e-9
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 0 
Query:  300 DAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGAVAKDPGIKVDLLADIVVANGVAVTFP 365
            D   G  P+ +  L+ +CR+SDKATCEIL+E+G+V VNG V  DP   VDL+ D +  +G  VT P
Sbjct:  171 DVVGGRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGEPVTLP 236
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2109.6393.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JE62_9PHAE2.490e-14760.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYC7_ECTSI5.460e-11958.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSP6_9STRA8.870e-2450.41S4 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A4D9D3K9_9STRA5.360e-948.48Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 63..83
NoneNo IPR availableCOILSCoilCoilcoord: 275..295
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 309..359
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 307..363
e-value: 1.8E-6
score: 29.2
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 308..383
score: 9.651

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2109contigL-elsbetiae_contig2109:2855..7570 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2109.6393.1mRNA_L-elsbetiae_contig2109.6393.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig2109 2800..8549 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig2109.6393.1 ID=prot_L-elsbetiae_contig2109.6393.1|Name=mRNA_L-elsbetiae_contig2109.6393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=438bp
MGDEGGVGGPKGDGRGKEWTVDLCCRRLSLLHRKLRQIKSLQAQQARDPD
SLDDAQRIKLGRKHFLVTEISELEALRRDLRERDWESGTSSAAPKKKESK
SRLPLGPFAGVNAAGHDGLPQQQEEEDEASRPEEDDGAEYTRDGLRLASP
KRPVRPPSPVAAAPAEQQPVASKAEPTGGRQVAPPSVLEDADLFSGGGGA
AAGGVAAMADLTKTSVDGQEDDDTEDGGGAGGGGFDWEEEGHEDMEGQMA
LAAAAAAARASPSGAAARSGGGGDVASSEEEEEGVEEEKEAREEARPMVD
APAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGAVAKDPGIKVDL
LADIVVANGVAVTFPGKIDNSDETRKPREDEGKRTGPIPKAEKNTWKQKT
KYRWSMDEGLLAKRTRRAANAKAFEKKRRSGGGYDDW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036986S4_RNA-bd_sf
IPR002942S4_RNA-bd