prot_L-elsbetiae_contig2108.6390.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig2108.6390.1
Unique Nameprot_L-elsbetiae_contig2108.6390.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length198
Homology
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BLAST of mRNA_L-elsbetiae_contig2108.6390.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.550e-33
Identity = 104/216 (48.15%), Postives = 127/216 (58.80%), Query Frame = 0 
Query:    1 MEKFRRPS------------GSHGDGGHRRGAGGAG------AFANSGERQQPSRFACGDALQTPTEAPPTGGRGMASFSTALSQASSTLLTPQRQTQQQPGGFSLFGGKAHSTPASSIGTGSDRRLPLSSHTPIDNSTAASSRAGMAYGVGGEV-VGRGLSRFKTLAQTTQEED-EREQNRRHGLVDDSSETVNHTAIAARGMTLPSAG-LSPDS 195
            MEKFRRP             G+ G+ GH +G G A       +FAN+   Q  S F     L TPT  P   G GM SFS ALS+ASST++TP +QTQQQPGGFS+FGGKA+STPAS     S  + PLSSHTPID++T   +   + YG GG   VG GL+RFKTLAQ TQEED +++Q RR G    +S          RGM  PS+  L+P S
Sbjct:    1 MEKFRRPLWPDDHRFGASGIGAGGERGHGKGPGTASDRHISQSFANARTSQHSSPF-----LHTPTSGPRGTGGGMVSFSPALSRASSTMMTPVQQTQQQPGGFSMFGGKAYSTPASHGSISS--QPPLSSHTPIDSNTRTVAPGTIPYGSGGSSGVGGGLARFKTLAQETQEEDHKKQQERRGGSGRGNSSGCGIRDSTVRGMPSPSSNFLAPSS 209
[Close]
BLAST of mRNA_L-elsbetiae_contig2108.6390.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.470e-23
Identity = 65/111 (58.56%), Postives = 79/111 (71.17%), Query Frame = 0 
Query:   44 LQTPTEAPPTGGRGMASFSTALSQASSTLLTPQRQTQQQPGGFSLFGGKAHSTPASSIGTGSDRRLPLSSHTPIDNSTAASSRAGMAYGVGGEV-VGRGLSRFKTLAQTTQ 153
            L TPT  P   GRGMASFS ALS+AS+T++TP +QTQQ+P GFS+FGGKA+STPAS     S  + PLSSHTPI ++T   +   + YG GG   VG GL+RFKTL Q TQ
Sbjct:  106 LHTPTSGPRGTGRGMASFSPALSRASTTMMTPVQQTQQKPEGFSMFGGKAYSTPASHGSICS--QPPLSSHTPIGSNTPTVAPGTIPYGGGGSSGVGGGLARFKTLVQETQ 214
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2108.6390.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J5W8_9PHAE1.550e-3348.15POLAc domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FK42_ECTSI2.470e-2358.56DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2108contigL-elsbetiae_contig2108:1241..1834 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2108.6390.1mRNA_L-elsbetiae_contig2108.6390.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig2108 990..2675 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig2108.6390.1 ID=prot_L-elsbetiae_contig2108.6390.1|Name=mRNA_L-elsbetiae_contig2108.6390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
MEKFRRPSGSHGDGGHRRGAGGAGAFANSGERQQPSRFACGDALQTPTEA
PPTGGRGMASFSTALSQASSTLLTPQRQTQQQPGGFSLFGGKAHSTPASS
IGTGSDRRLPLSSHTPIDNSTAASSRAGMAYGVGGEVVGRGLSRFKTLAQ
TTQEEDEREQNRRHGLVDDSSETVNHTAIAARGMTLPSAGLSPDSAG*
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