prot_L-elsbetiae_contig20786.6277.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig20786.6277.1
Unique Name	prot_L-elsbetiae_contig20786.6277.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	116

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig20786.6277.1 vs. uniprot
Match: Q8QNN4_ESV1K (EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN4_ESV1K)

HSP 1 Score: 130 bits (327), Expect = 3.600e-35
Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 0

Query:    1 SLSSTVTFVGETSINTXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFVSVWRLVVTIITAAVGETCYLAHKPVGRIFDFISDYMLSLQAFSSGLPGLAKVLQAQATDVKTGVNLKSI 116
            SL+STV+F+GET+IN XXXXXXXXXXXXXXXXXXXXXXXXXXXXQ VSVWRLVVTI+TA +GETCYLA   +GR+FDF SDY+LSLQAFSSGLPGLAKVL+AQA DVKTGVNL SI
Sbjct:   64 SLASTVSFIGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLVSVWRLVVTILTATLGETCYLATNGIGRVFDFFSDYLLSLQAFSSGLPGLAKVLKAQADDVKTGVNLGSI 179

[Close]

BLAST of mRNA_L-elsbetiae_contig20786.6277.1 vs. uniprot
Match: D8LP64_ECTSI (EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP64_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 8.500e-34
Identity = 93/116 (80.17%), Postives = 102/116 (87.93%), Query Frame = 0

Query:    1 SLSSTVTFVGETSINTXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFVSVWRLVVTIITAAVGETCYLAHKPVGRIFDFISDYMLSLQAFSSGLPGLAKVLQAQATDVKTGVNLKSI 116
            SL+STV+FVGET+IN XXXXXXXXXXXXXXXXXXXXXXXXXXX Q VSVWRLVV IITA +GETCYLA   + R+FDF SDYMLSLQAF SGLPGLAKVL+AQ  DVKTGVN+ +I
Sbjct:    6 SLASTVSFVGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLVSVWRLVVVIITATLGETCYLATNGIDRVFDFFSDYMLSLQAFRSGLPGLAKVLKAQVDDVKTGVNVTNI 121

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig20786.6277.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig20786.6277.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Q8QNN4_ESV1K	3.600e-35	83.62	EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (i...	[more]
D8LP64_ECTSI	8.500e-34	80.17	EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..23
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 49..68
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 44..48
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 69..116
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 24..43
None	No IPR available	TMHMM	TMhelix		coord: 25..47

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig20786	contig	L-elsbetiae_contig20786:839..1186 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig20786.6277.1	mRNA_L-elsbetiae_contig20786.6277.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig20786 839..1186 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig20786.6277.1 ID=prot_L-elsbetiae_contig20786.6277.1|Name=mRNA_L-elsbetiae_contig20786.6277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
SLSSTVTFVGETSINTLSFVRDTVFSILTFVVQTVTSIVLFVLNQFVSVW
RLVVTIITAAVGETCYLAHKPVGRIFDFISDYMLSLQAFSSGLPGLAKVL
QAQATDVKTGVNLKSI