prot_L-elsbetiae_contig2069.6232.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig2069.6232.1
Unique Nameprot_L-elsbetiae_contig2069.6232.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length227
Homology
BLAST of mRNA_L-elsbetiae_contig2069.6232.1 vs. uniprot
Match: D8LF43_ECTSI (RPA_interact_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF43_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 1.600e-79
Identity = 123/174 (70.69%), Postives = 141/174 (81.03%), Query Frame = 0
Query:   54 MEGDGLGWGDDG-VESYSDEDHMLSPEEYLEMMQYIEEACKEEDRLAEAEALEEYETTKRLEEEEFEYAVSSGLAGVDGNGQADADAVLCPICKLDYLVQAGPPSDSIVCACGFRLDTAGDRLGLEHLRQQLAETYGQHGAGCSADPSFALEGASGLDVLWSSCEGCGFARVVL 226
            ++ D LGWGD G  E   DE+H+LSP+EYLEMMQYIEEACKEED  AEA  LE+YE T+RLEEEE EYAV+S L  ++GNGQ DA  VLCP+CK DYL+  GPPS SIVCACGFRLDT GDRLGLEH +QQLA+TY +H   CSA+PSF +EGA G DVLWSSC+GCGFARVVL
Sbjct:    2 VDEDELGWGDGGGAEDDCDEEHLLSPDEYLEMMQYIEEACKEEDFRAEAAVLEDYELTRRLEEEEVEYAVAS-LDDINGNGQDDA--VLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL 172          
BLAST of mRNA_L-elsbetiae_contig2069.6232.1 vs. uniprot
Match: A0A835YX80_9STRA (Replication protein A interacting C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX80_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.340e-20
Identity = 59/156 (37.82%), Postives = 78/156 (50.00%), Query Frame = 0
Query:   76 LSPEEYLEMMQYIEEACKEEDRLAEAEALEEYETTKRLEEEEFEYAVSSGLAGV-----DGNGQADADAVLCPICKLDYLVQAGPPSDSIVCACGFRLDTAGDRLGLEHLRQQLAETYGQHGAGCSADPSFALEGASGLDVLWSSCEGCGFARVVL 226
            L+PEEY +MM +IE+A   E   A+A                      + LA       DG G  D D VLCP+CK  +L+Q G    +I+C CGFRL T G+ + L  LRQ LAE +  H   C   P+F +    G  +LWS C  CGF ++VL
Sbjct:    5 LTPEEYTDMMLFIEQALAAELARADASXXXXXXXXXXXXXXXXXXXXXAALARAAAEAEDGRGWRD-DEVLCPVCKGGWLLQHGA---TIMCTCGFRLQTDGEGMQLGVLRQALAEVFTDHRERCHLQPTFRVREEFGAAMLWSECSACGFEQIVL 156          
BLAST of mRNA_L-elsbetiae_contig2069.6232.1 vs. uniprot
Match: A0A6H5KTE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.240e-11
Identity = 65/103 (63.11%), Postives = 73/103 (70.87%), Query Frame = 0
Query:    1 MSTSLREECQGFVAGG-EGDDALMVDDSRXXXXXXXXXXXXXXXXXXXXXXPEAMEGDGLGWGDDG-VESYSDEDHMLSPEEYLEMMQYIEEACKEEDRLAEA 101
            MS S RE+ QGFV G  + DDALM  D        XXXXXXXXXXXXXXXX   ++ D LGWGD G  E   DE+++LSP+EYLEMMQYIEEACKEED  AEA
Sbjct:  214 MSISFREQTQGFVEGNNDEDDALMAHDD---GHAQXXXXXXXXXXXXXXXXXXMVDEDELGWGDGGGAEDCCDEENLLSPDEYLEMMQYIEEACKEEDLRAEA 313          
BLAST of mRNA_L-elsbetiae_contig2069.6232.1 vs. uniprot
Match: A0A7S0VBY7_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VBY7_9CRYP)

HSP 1 Score: 65.9 bits (159), Expect = 8.120e-10
Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 0
Query:   72 EDHMLSPEEYLEMMQYIEEACKEEDRLAEAEALEEYETTKRLEEEEFEYAVSSGLAGVDGNGQADADAVLCPICKLDYLVQAGPPSDSIVCACGFRLDTAGDRLGLEHLRQQLAETYGQH-GAGCSADPSFALEGA-SGLDVLWSSCEGCGFARVVL 226
            E+  LS EEY+ +MQY+EEA   E R  E E +      + L ++E   A S+ LA       A+   V CP+C  D L       + + C CG RL    +++ L  L   L + +  H  +GC+  P  +++    G+D+L  +C  C F  VV+
Sbjct:   31 EEDGLSEEEYIGLMQYLEEAVVTELRKQEQEII-----AQELFDQER--AESNALAA----SHAEGHRVTCPVCMRDTLHSH---RNVVFCGCGMRLSCQTEQVSLVQLESMLLDRFAAHTSSGCANQPVCSIQTVPGGVDMLMMACAACDFMDVVV 173          
BLAST of mRNA_L-elsbetiae_contig2069.6232.1 vs. uniprot
Match: A0A2D4BMQ0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMQ0_PYTIN)

HSP 1 Score: 55.1 bits (131), Expect = 1.750e-5
Identity = 51/168 (30.36%), Postives = 79/168 (47.02%), Query Frame = 0
Query:   76 LSPEEYLEMMQYIEEACKEEDRLAEAEALEEYETTKRLEEEEFEYAVSSGLAGVDGNGQADADA----------VLCPICKLDYLVQAGPP-SDSIVCACGFRLDTAGDRLG-LEHLRQQLAETYGQHGAGCSADPSFALEGA------SGLDVLWSSCEGCGFARVV 225
            LS ++YL++MQ +EEA +EE R    E+++E    +++ + E E ++ + L G+D +G AD D           VLCP+CK   L  A    S ++ C CGF         G LE  ++++   +  H   C+ +P F   G          D L  SC  CG    V
Sbjct:  100 LSEDDYLDIMQSLEEALREESR---EESVDELLLAEQMVDFE-EASLMAMLNGLDLDGVADFDQHYVADESGLHVLCPMCKTGSLECATRSWSSTLFCKCGFTFVLKDVLHGALEDFQERIVAAFLFHRESCAVEPCFDKIGDVKDGDHEVTDALLLSCATCGHESFV 263          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2069.6232.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LF43_ECTSI1.600e-7970.69RPA_interact_C domain-containing protein n=1 Tax=E... [more]
A0A835YX80_9STRA1.340e-2037.82Replication protein A interacting C-terminal-domai... [more]
A0A6H5KTE2_9PHAE1.240e-1163.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0VBY7_9CRYP8.120e-1031.21Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A2D4BMQ0_PYTIN1.750e-530.36Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028159RPA-interacting protein, C-terminal domainPFAMPF14768RPA_interact_Ccoord: 141..223
e-value: 3.1E-21
score: 75.7
IPR028156RPA-interacting proteinPANTHERPTHR31742FAMILY NOT NAMEDcoord: 44..226
NoneNo IPR availablePRODOMPD472859coord: 138..226
e-value: 5.0E-6
score: 120.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2069contigL-elsbetiae_contig2069:11781..16103 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2069.6232.1mRNA_L-elsbetiae_contig2069.6232.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig2069 11777..16244 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig2069.6232.1 ID=prot_L-elsbetiae_contig2069.6232.1|Name=mRNA_L-elsbetiae_contig2069.6232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=227bp
MSTSLREECQGFVAGGEGDDALMVDDSRGGEELTLQQKKQQQQQQQQQQQ
PEAMEGDGLGWGDDGVESYSDEDHMLSPEEYLEMMQYIEEACKEEDRLAE
AEALEEYETTKRLEEEEFEYAVSSGLAGVDGNGQADADAVLCPICKLDYL
VQAGPPSDSIVCACGFRLDTAGDRLGLEHLRQQLAETYGQHGAGCSADPS
FALEGASGLDVLWSSCEGCGFARVVL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028159RPA_interact_C_dom
IPR028156RIP