prot_L-elsbetiae_contig20584.6206.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig20584.6206.1
Unique Nameprot_L-elsbetiae_contig20584.6206.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length92
Homology
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BLAST of mRNA_L-elsbetiae_contig20584.6206.1 vs. uniprot
Match: D7FKL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL0_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.550e-43
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 0 
Query:    1 MNNRRDFAHVRRMLQEAEEHWEGATLKMYSCCIGYMGRGGNWQGAMDVLNQMHRSGKEPDAFCINDGMNACKRAGKYRKALEVFELARDVWG 92
            M NRRDF  V ++L EAE   +GAT KMYSCCIGYMG+GGNW+GA+DVL++MH  G +PDAFCINDGMNACKRA KY KAL VFE ARDVWG
Sbjct:   13 MKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWG 104
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BLAST of mRNA_L-elsbetiae_contig20584.6206.1 vs. uniprot
Match: A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 7.120e-40
Identity = 68/92 (73.91%), Postives = 76/92 (82.61%), Query Frame = 0 
Query:    1 MNNRRDFAHVRRMLQEAEEHWEGATLKMYSCCIGYMGRGGNWQGAMDVLNQMHRSGKEPDAFCINDGMNACKRAGKYRKALEVFELARDVWG 92
            M NRRDF  V ++L EAE   EGAT KMYSCCIGYMG+GGNW+GA+DVL++MH  G +PDAFCINDGMNACKRA KY KAL VFE ARDVWG
Sbjct:  200 MKNRRDFGAVLKLLHEAERTGEGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWG 291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20584.6206.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKL0_ECTSI1.550e-4372.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA5_9PHAE7.120e-4073.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 28..61
e-value: 1.9E-7
score: 28.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 68..85
e-value: 0.037
score: 14.3
coord: 28..56
e-value: 0.0063
score: 16.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 60..90
score: 6.522
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 25..59
score: 8.923
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..90
e-value: 9.9E-13
score: 49.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20584contigL-elsbetiae_contig20584:454..729 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20584.6206.1mRNA_L-elsbetiae_contig20584.6206.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig20584 454..738 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig20584.6206.1 ID=prot_L-elsbetiae_contig20584.6206.1|Name=mRNA_L-elsbetiae_contig20584.6206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MNNRRDFAHVRRMLQEAEEHWEGATLKMYSCCIGYMGRGGNWQGAMDVLN
QMHRSGKEPDAFCINDGMNACKRAGKYRKALEVFELARDVWG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf