prot_L-elsbetiae_contig2012.6050.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig2012.6050.1
Unique Nameprot_L-elsbetiae_contig2012.6050.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length178
Homology
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BLAST of mRNA_L-elsbetiae_contig2012.6050.1 vs. uniprot
Match: A0A6H5J9M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.280e-31
Identity = 92/193 (47.67%), Postives = 113/193 (58.55%), Query Frame = 0 
Query:    1 MKRPNTRGFLRRAFLLSLSSGRVGCFVVCGAG-RLRSTAQQLRPLARGADRPL------LQAQHP---HSSSRAASDSVVGFGWHRSL--FQRATSGRTRFLGQ-GVRLSASEAVGEEDGEQQXXXXXXXXXXXXXAGPPVKMTE--ARIEENYTPEEREFVSNFYAEYNAAEEPRPDDDPLAVYSNDYKMYA 178
            MK P T+ FLR   L+SLS+G VGCF+V G G R RSTAQ+ RP  R  DRPL        A  P   H +SR+A    +G G  RS+  ++RA SG  +   + GVRL A+E  GEED E+               G   + +E    +E+NYTPEEREFV NFYAEY AAEEP  D+D LAVY + YKMYA
Sbjct:   12 MKSPTTKCFLRVLLLISLSAGPVGCFIVSGGGGRTRSTAQEFRPN-RCVDRPLQSDYAGTNAAAPMAVHPASRSAG--WMGLGGQRSVSTWRRAGSGVDKACWRNGVRLFAAEGEGEED-EEAFENDDDEAVALREGGDDRQRSEKEVEVEKNYTPEEREFVENFYAEYEAAEEPERDEDELAVYDHAYKMYA 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2012.6050.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J9M3_9PHAE2.280e-3147.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..178
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2012contigL-elsbetiae_contig2012:2846..5418 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2012.6050.1mRNA_L-elsbetiae_contig2012.6050.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig2012 2846..5444 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig2012.6050.1 ID=prot_L-elsbetiae_contig2012.6050.1|Name=mRNA_L-elsbetiae_contig2012.6050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MKRPNTRGFLRRAFLLSLSSGRVGCFVVCGAGRLRSTAQQLRPLARGADR
PLLQAQHPHSSSRAASDSVVGFGWHRSLFQRATSGRTRFLGQGVRLSASE
AVGEEDGEQQSERAAAVAAVAAAAGPPVKMTEARIEENYTPEEREFVSNF
YAEYNAAEEPRPDDDPLAVYSNDYKMYA
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