prot_L-elsbetiae_contig201.6038.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig201.6038.1
Unique Nameprot_L-elsbetiae_contig201.6038.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length172
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig201.6038.1 vs. uniprot
Match: D8LKP0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.570e-9
Identity = 69/158 (43.67%), Postives = 83/158 (52.53%), Query Frame = 0 
Query:   12 LQASPL-----VPSDPVLAMQMGARLALTGHLNLIPFGDINTATGGSATAPAEFRAQPAAPXXXXXVGAIAAAGVGAXXXXXXXXXXXXXXXXXXAVFSVAAAVPAPTAPAAPPGVLPAWTRLPHPPLWLKPDDHPPGLPSKPVCSRPSNNTSLESGG 164
            LQ+S L     +PSDPVLAMQMGA++AL+G+L LIPFG  +  TGG A A +      A P       A +              XXXXXXXXXX        VP       P G LPAWT LPHPP WLK ++HP G+P       PS+ T+  S G
Sbjct:  168 LQSSSLATVGRIPSDPVLAMQMGAQMALSGNLGLIPFG-ASMGTGGIAGAISGTPTAGAKPT------AASTQAQHPLIAPPAALXXXXXXXXXXXXXXXXXXVP-------PLGGLPAWTGLPHPPQWLKKEEHPQGVP-------PSHKTNSSSRG 304
[Close]
BLAST of mRNA_L-elsbetiae_contig201.6038.1 vs. uniprot
Match: A0A6H5J8M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.220e-6
Identity = 60/129 (46.51%), Postives = 70/129 (54.26%), Query Frame = 0 
Query:   18 VPSDPVLAMQMGARLALTGHLNLIPFGDINTATGGSATAPAEFRAQPAAPXXXXXVGAIAAAGVGAXXXXXXXXXXXXXXXXXXAVFSVAAAVPAPTAPAAPPGVLPAWTRLPHPPLWLKPDDHPPGLP 146
            +PSDPVLAMQMGAR+AL+G+L LIPFG  +  +GG A A       PAA          A   + A     XXXXXXXXXXXXX                     LPAWT LPHPP WL+ + HP G+P
Sbjct:  179 IPSDPVLAMQMGARMALSGNLGLIPFG-ASMGSGGIAGA---IGGTPAAGAKPTAASTQAQHPLIAPPAALXXXXXXXXXXXXXXXXXXXXXXDG----------LPAWTGLPHPPQWLETEKHPQGVP 293
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig201.6038.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKP0_ECTSI3.570e-943.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J8M8_9PHAE1.220e-646.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig201contigL-elsbetiae_contig201:46532..47946 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig201.6038.1mRNA_L-elsbetiae_contig201.6038.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig201 46532..47948 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig201.6038.1 ID=prot_L-elsbetiae_contig201.6038.1|Name=mRNA_L-elsbetiae_contig201.6038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
LTVGNRGAGVGLQASPLVPSDPVLAMQMGARLALTGHLNLIPFGDINTAT
GGSATAPAEFRAQPAAPPAAPPVGAIAAAGVGAAAVTAALANNNNNNNNN
TAVFSVAAAVPAPTAPAAPPGVLPAWTRLPHPPLWLKPDDHPPGLPSKPV
CSRPSNNTSLESGGAKAKAGAG
back to top