prot_L-elsbetiae_contig1912.5642.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1912.5642.1
Unique Nameprot_L-elsbetiae_contig1912.5642.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length363
Homology
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BLAST of mRNA_L-elsbetiae_contig1912.5642.1 vs. uniprot
Match: A0A6H5L2E5_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E5_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 2.900e-90
Identity = 198/393 (50.38%), Postives = 235/393 (59.80%), Query Frame = 0 
Query:   11 QDSGVVTAQCEFCLRRYLKAAMSTHLQGCELRLVRCPFQCGVKVLVRNLDKHKNSCPMRQSGENKEDVESAASSGSIST--ATLETHPTTPPTNKEREKGDT-----ARDEENAEERSQLVAQGPGQGDP--------------SRTVTCMRCQESLPFLLVPSHGAKCKGKKESGFHLGA--TAAAPPVASERQE-------------QELSLRCPAKSTEIESKSKTLTAAAEKSAPSEGLSQSSISGSDWRKSPSPLTS-----PRDLG-MPRPFSSRLGAPLSPPAAGTKAWHGACRTEEGVPPGAKVPLSPARSKNVRTWGTRQVTSWLRDIMRPPRADVISRFHDGGVDGTTLLGITDRYLLHPTEGMGITDESTRRQILEALGSLR 361
            QDSGVVTAQCEFCLRRYLK+AMSTHLQ CELRLVRCPFQCGVKVLVRNL+KH  SC M++S E++  V ++A+   +    AT  T    PP    R+KGD        DE NA +   ++A GP                    RTVTCMRC ESLPF LVPSHG KCKGKK  G  LGA  TA +P   SER +               +  R P+  + + S+S++            GLS   I  S      S L+S     P D G +P+  S R       PA   KAWH + R    + PG +VP SP R K+VR WGTRQVTSWLR+IMRPPRAD+IS+FHD GVDGT LL +TDRYLLHPTEG+GITDE  RRQILEA+ SL+
Sbjct:  933 QDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESAESEGVVNASATPTRVRNLDATASTR-AGPPNETTRKKGDEHASHGETDEGNARQGG-VLAIGPXXXXXXXXXXXXXXXXXXADRTVTCMRCHESLPFHLVPSHGPKCKGKKGEG-ELGARATAGSPSGTSERWQGPPSGFHYPPPFGAAVDFRPPSLRSPVSSQSRSGVGGNPLRG---GLSTPPILSSAVGTHGSTLSSLSSSGPGDTGAVPKVSSGRSVVTPCSPAVSPKAWHASSRIGTVLTPGVRVPPSPPRLKDVRAWGTRQVTSWLREIMRPPRADIISKFHDSGVDGTALLSVTDRYLLHPTEGLGITDEVVRRQILEAMDSLK 1319
[Close]
BLAST of mRNA_L-elsbetiae_contig1912.5642.1 vs. uniprot
Match: D8LSX8_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX8_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 4.960e-90
Identity = 191/395 (48.35%), Postives = 233/395 (58.99%), Query Frame = 0 
Query:   11 QDSGVVTAQCEFCLRRYLKAAMSTHLQGCELRLVRCPFQCGVKVLVRNLDKHKNSCPMRQSGENKEDVESAASSGSI----STATLETHPTTPPTNKEREKGDTARDEENAEERSQLVAQGPGQ----------------------GDPSRTVTCMRCQESLPFLLVPSHGAKCKGKKESGFHLGA--TAAAPPVASERQE-------------QELSLRCPAKSTEIESKSKTLTAAAEKSAPSEGLSQSSISGSDWRKSPSPLTS--PRDLG-MPRPFSSRLGAPLSPPAAGTKAWHGACRTEEGVPPGAKVPLSPARSKNVRTWGTRQVTSWLRDIMRPPRADVISRFHDGGVDGTTLLGITDRYLLHPTEGMGITDESTRRQILEALGSLR 361
            +DSGVVTAQCEFCLRRYLK+AMSTHLQ CELRLVRCPFQCGVKVLVRNL+KH  SC M++S E+   V+++A++  +    +TA     P    T K+ ++  +  DE NA++   L   GPG                        D  RTVTCMRC ESLPF LVPSHG KCKGKK  G  LGA  TAA+P   SER                 +  R P+  + + S+S++                          + SPL+S  P D G +P+  S R       PA   KAWH + R    + PG +VP SP R K+VR WGTRQVTSWLR+IMRPPRAD+IS+FHD GVDGT LL +TDRYLLHPTEG+GITDE  RRQILEA+  L+
Sbjct:  734 KDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESVESGGVVDASATATRVRNLDATAGTRVEPHNETTRKKGDELASHGDEANAQQGGALAI-GPGPEPXXXXXXXXXXXXXXXXXXXXXDAGRTVTCMRCHESLPFHLVPSHGPKCKGKKGEG-ELGARATAASPSGTSERSRGPPSGFQDPPPFGAAVGFRPPSLRSPVSSQSRSGVGGTPXXXXXXXXXXXXXXXXTHGSTLSPLSSSGPGDTGAVPKISSGRSVVTPHSPAVSPKAWHASSRIGTVLTPGVRVPPSPPRLKDVRAWGTRQVTSWLREIMRPPRADIISKFHDSGVDGTALLSVTDRYLLHPTEGLGITDEVVRRQILEAMDFLK 1126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1912.5642.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2E5_9PHAE2.900e-9050.38SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSX8_ECTSI4.960e-9048.35SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 11..70
e-value: 1.6E-9
score: 39.3
IPR001660Sterile alpha motif domainPFAMPF07647SAM_2coord: 290..360
e-value: 2.5E-4
score: 21.1
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 293..362
score: 13.074
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 282..362
e-value: 4.4E-12
score: 48.3
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 288..361
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 19..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1912contigL-elsbetiae_contig1912:2885..4471 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1912.5642.1mRNA_L-elsbetiae_contig1912.5642.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1912 2885..5904 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1912.5642.1 ID=prot_L-elsbetiae_contig1912.5642.1|Name=mRNA_L-elsbetiae_contig1912.5642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=363bp
MRHGFLWWYMQDSGVVTAQCEFCLRRYLKAAMSTHLQGCELRLVRCPFQC
GVKVLVRNLDKHKNSCPMRQSGENKEDVESAASSGSISTATLETHPTTPP
TNKEREKGDTARDEENAEERSQLVAQGPGQGDPSRTVTCMRCQESLPFLL
VPSHGAKCKGKKESGFHLGATAAAPPVASERQEQELSLRCPAKSTEIESK
SKTLTAAAEKSAPSEGLSQSSISGSDWRKSPSPLTSPRDLGMPRPFSSRL
GAPLSPPAAGTKAWHGACRTEEGVPPGAKVPLSPARSKNVRTWGTRQVTS
WLRDIMRPPRADVISRFHDGGVDGTTLLGITDRYLLHPTEGMGITDESTR
RQILEALGSLRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001660SAM
IPR013761SAM/pointed_sf
IPR008974TRAF-like