prot_L-elsbetiae_contig1905.5606.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1905.5606.1
Unique Nameprot_L-elsbetiae_contig1905.5606.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length181
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1905.5606.1 vs. uniprot
Match: D8LD01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD01_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.170e-32
Identity = 83/126 (65.87%), Postives = 90/126 (71.43%), Query Frame = 0 
Query:   41 RSCRVRRGSLQLALTGEVLVVGA--VAGVTAIAATRGLSTLAGAFKLADYRTTSGHDLRLDERLQSKRRQLLPSSEAAPPTRSGS--SSEGR-VSGSGLGVDLDWREEIRLASQLPEDVGPVGRGG 161
            RSC  RR  LQLAL  E L VGA  +AG   I A RGLSTLAGAFKLADYRTTSGHDLRLDE+L SKRR+L PSSE    T SGS  S+ GR  S + LGV+ DWREEIRLASQLP+D    G  G
Sbjct:   60 RSCCGRR-ELQLALESEALAVGAAVIAGAAIIGAGRGLSTLAGAFKLADYRTTSGHDLRLDEKLGSKRRRLDPSSE----TTSGSLESTGGRGASETALGVETDWREEIRLASQLPDDSVVFGGSG 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1905.5606.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD01_ECTSI5.170e-3265.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..180
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableTMHMMTMhelixcoord: 50..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1905contigL-elsbetiae_contig1905:1279..3311 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1905.5606.1mRNA_L-elsbetiae_contig1905.5606.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1905 1210..4109 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1905.5606.1 ID=prot_L-elsbetiae_contig1905.5606.1|Name=mRNA_L-elsbetiae_contig1905.5606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MRVCYSDAKTATLVLLLSLSPAFGFTHHASRLSSPLRPEGRSCRVRRGSL
QLALTGEVLVVGAVAGVTAIAATRGLSTLAGAFKLADYRTTSGHDLRLDE
RLQSKRRQLLPSSEAAPPTRSGSSSEGRVSGSGLGVDLDWREEIRLASQL
PEDVGPVGRGGPTVVARVEETGREIGRHRD*
back to top