prot_L-elsbetiae_contig1891.5555.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1891.5555.1
Unique Nameprot_L-elsbetiae_contig1891.5555.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length260
Homology
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BLAST of mRNA_L-elsbetiae_contig1891.5555.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.190e-11
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 0 
Query:    1 MRKACDRCTMRKIKCDGTPIICKRCETDGQYCRYSPRAKSGPKPQTVRRTKSTPSSSR 58
            +R +CDRCTMRKIKCDG    C+RC+ D Q+C YS ++KSGPKP ++RR KS+P+  R
Sbjct:  421 LRTSCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRR-KSSPTPPR 477
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BLAST of mRNA_L-elsbetiae_contig1891.5555.1 vs. uniprot
Match: A0A6H5L603_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L603_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.630e-10
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:    4 ACDRCTMRKIKCDGTPIICKRCETDGQYCRYSPRAKSGPKPQTVRRTKSTPSSSR 58
            +CDRCTMRKIKCDG    C+RC+ D Q+C YS ++KSGPKP ++RR KS+P S R
Sbjct:  474 SCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRR-KSSPRSPR 527
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1891.5555.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLU9_ECTSI6.190e-1158.62C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
A0A6H5L603_9PHAE1.630e-1061.82Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 1..43
e-value: 8.0E-4
score: 28.7
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 3..38
e-value: 6.9E-6
score: 26.1
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 4..32
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 4..34
score: 9.567
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 1..58
e-value: 3.5E-9
score: 38.5
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 2..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1891contigL-elsbetiae_contig1891:13404..15271 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1891.5555.1mRNA_L-elsbetiae_contig1891.5555.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1891 13211..15332 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1891.5555.1 ID=prot_L-elsbetiae_contig1891.5555.1|Name=mRNA_L-elsbetiae_contig1891.5555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=260bp
MRKACDRCTMRKIKCDGTPIICKRCETDGQYCRYSPRAKSGPKPQTVRRT
KSTPSSSRMVTPASAPATPYAYVTPYVSETGYASAAVADAAAAAAATAAV
VGAKRAASPGQDQDRRGTGGESTLSTAPGARASSPLTASPVSLLPQPAKA
MTPTTAVALAALAGAAAAGGSVQAALGPAEGATITAFGDLGRERVVPATG
VVGTAAAAAAMSAVAAADCGGVLGVDEPGAASAASNAGGGAATTATPEAL
PWVAGGRGQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf