prot_L-elsbetiae_contig18829.5519.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18829.5519.1
Unique Nameprot_L-elsbetiae_contig18829.5519.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length697
Homology
BLAST of mRNA_L-elsbetiae_contig18829.5519.1 vs. uniprot
Match: A0A6H5KZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW8_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.490e-45
Identity = 111/242 (45.87%), Postives = 153/242 (63.22%), Query Frame = 0
Query:   80 TASFGGD----QRERPQVILKPKEKKTPRYSGDIVSFITEFKLHLDSTGLLYTLDPPVGGAGPIFFINGGTKEDRIVLHGEKKVSDHERAYHKLLEATEGAEFRPKILAMGCVSGAWSELLDHCLPSSDVQKQAMKQELTNMKMNLGEDPRKYFLRFDKVLVKFRAVDG-VITDSEVVTMLRRNLSADYEILQSLLLLEPLITRKLLEHSVRAFHSEKRLGDRALQTAVVPSTDPHALRFVS 316
            TASF  D    QR+R  V+   K+ K P +  +   F + F+L L    L +TL  P      I+ +NG  + + + LHGE++VSDHE A+  L+ A +GA  + +ILA+G VSGAW      CLP S+ +++A+K  LTNMKM LGEDP++Y LRFD+VL   RAV+G  ITD EV+ MLRRNLSADYE +  L +    +TRK LE+ VR+ ++E+ LG+ A +TA V +T  H L FVS
Sbjct:   79 TASFFDDRRQQQRDRDYVL---KDWKPPVHDSNFPLFKSLFELLLAREDLSHTLAKPASPDQCIWLLNGLPRSENVCLHGERRVSDHEYAFEYLMRARKGANLQARILAVGTVSGAWEAAQQFCLPMSNFEQEALKLSLTNMKMQLGEDPKEYLLRFDRVLSTLRAVNGDAITDREVLAMLRRNLSADYEQVHILFMANSSLTRKNLENLVRSLYAERDLGNVARRTAAVTAT--HTL-FVS 314          
BLAST of mRNA_L-elsbetiae_contig18829.5519.1 vs. uniprot
Match: A0A6H5KBL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL6_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 8.110e-39
Identity = 101/233 (43.35%), Postives = 140/233 (60.09%), Query Frame = 0
Query:   83 FGGDQRERPQVILKPKEKKTPRYSGDIVSFITEFKLHLDSTGLLYTLDPPVGGAGPIFFINGGTKEDRIVLHGEKKVSDHERAYHKLLEATEGAEFRPKILAMGCVSGAWSELLDHCLPSSDVQKQAMKQELTNMKMNLGEDPRKYFLRFDKVLVKFRAVDGV-ITDSEVVTMLRRNLSADYEILQSLLLLEPLITRKLLEHSVRAFHSEKRLGDRALQTAVVPSTDPHALRF 314
            F GD+ +R       K++K P Y G+   F T F+  L    L +TL  P      I+ I+    E+    HGE++V DHE A+  L+ AT+GA F+ KI  +G V GAW      CLP SD  K+AMK  LTNM+M   E+ R YF+RFDKVL    A+DG  I+D EV+ +LRR+LSADY+ L+ +L+ +  +TR  LE  VR+   E+ LG+ +L+ A  P++DPHALRF
Sbjct:  465 FPGDRVQR-------KDRKPPVYDGNFPLFKTLFETFLTREDLGHTLAKPASPDQRIWLIHASRSEN-FRFHGEQRVRDHECAWENLMRATKGANFQAKIPEVGTVYGAWEAAQQFCLPMSDNLKEAMKLSLTNMRMQFREEARDYFIRFDKVLSTMGALDGDGISDQEVLAILRRSLSADYDQLKPVLMSDRSLTRAELESLVRSHRVEQDLGNSSLRAAA-PTSDPHALRF 688          
BLAST of mRNA_L-elsbetiae_contig18829.5519.1 vs. uniprot
Match: A0A6H5KR38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR38_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.790e-21
Identity = 63/116 (54.31%), Postives = 85/116 (73.28%), Query Frame = 0
Query:  204 DVQKQAMKQELTNMKMNLGEDPRKYFLRFDKVLVKFRAVDG-VITDSEVVTMLRRNLSADYEILQSLLLLEPLITRKLLEHSVRAFHSEKRLGDRALQTAVVPSTDPHALRFVSGG 318
            D +++A+K  L NMKM LGEDP++YFLRFD+VL   RAV+G  ITD EV+ MLRRNLSADYE +  L++    +TR+ LE+ VR+ H+E+ LG+ A +TA  P+ DP AL  V+GG
Sbjct:    3 DSEQEALKLSLMNMKMQLGEDPKEYFLRFDRVLSTLRAVNGDAITDREVLAMLRRNLSADYEQVYILVMANSSLTREDLENLVRSLHAERDLGNVARRTAA-PTGDPQALH-VAGG 116          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18829.5519.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZW8_9PHAE1.490e-4545.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBL6_9PHAE8.110e-3943.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KR38_9PHAE4.790e-2154.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..29
NoneNo IPR availableGENE3D4.10.60.10coord: 422..474
e-value: 1.2E-7
score: 33.3
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 191..270
e-value: 1.0E-8
score: 34.9
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 696..696
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 673..695
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..672
NoneNo IPR availableTMHMMTMhelixcoord: 673..695
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 454..470
e-value: 0.017
score: 22.1
coord: 431..447
e-value: 1.7
score: 9.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 454..468
score: 9.719
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 425..471

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18829contigL-elsbetiae_contig18829:47..2159 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18829.5519.1mRNA_L-elsbetiae_contig18829.5519.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18829 2..2977 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18829.5519.1 ID=prot_L-elsbetiae_contig18829.5519.1|Name=mRNA_L-elsbetiae_contig18829.5519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=697bp
MTEAVQKALEDLNKKYEDLKQDMERRETADEAAAGEAARLAGEAAGEESS
AEDAAGRYTGGGGGYDRYLHGFYGGRAEQTASFGGDQRERPQVILKPKEK
KTPRYSGDIVSFITEFKLHLDSTGLLYTLDPPVGGAGPIFFINGGTKEDR
IVLHGEKKVSDHERAYHKLLEATEGAEFRPKILAMGCVSGAWSELLDHCL
PSSDVQKQAMKQELTNMKMNLGEDPRKYFLRFDKVLVKFRAVDGVITDSE
VVTMLRRNLSADYEILQSLLLLEPLITRKLLEHSVRAFHSEKRLGDRALQ
TAVVPSTDPHALRFVSGGGGGNTSRSNGTGGGMQRRNGGFQQRQQGRYAS
NQGKGGYQGGYQGGQQGGYRQQQADPSSVRPSPPNPAPAALGSAIAEGFT
PGGPTDPGRNARFIQADGIVPPGATQGEVYHCGRCGQIGHPAFACQSLPR
FYGKCLECGEIGHMSRNCSFNPGNVVFQQQQQQQSRQFQGQQQHPQQQHS
RAQAAPAAGPPGGGHVNIVGPQQYNSAQQEYIVNCNPSGFVQQQPAFKLN
SFQQDFAANGGGSWGFQPGPVYNNPGGGHSSSSSSNSTSSNSISSSTATA
AAGVFPEVGEVLVFISSRRTRVFPTRSAGSSSSDSSNRSRSSRSRRVVGG
MEEGSSRTGGSRRTRRTLLPARVIRLVVLSTMGGGASLLPALLALL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf