prot_L-elsbetiae_contig1865.5455.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1865.5455.1
Unique Name	prot_L-elsbetiae_contig1865.5455.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	178

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig1865.5455.1 vs. uniprot
Match: D8LS50_ECTSI (Pc21g14270 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS50_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.440e-45
Identity = 79/133 (59.40%), Postives = 102/133 (76.69%), Query Frame = 0

Query:    2 QEKRGNALSCALFSCIAVGGLILGSPPSSVEPYMATARGYLAGLEGLSDRSAVSCLIVYAMANEYLTGRGPGSEYRKSMDSAKATFEGLPHKKRDPIISAVLTHFMVLDGFPLLQHVETSC----SVNPVNSG 130
            +  RG ALSC+LFSC+A+GGLI G PP++V P+M TAR  +A   GLSDR AVS LI+YAMA+EY+ G+GPG+EY K M++A+A FEGLP K +DP++SAVL HFMVL+G PLL+ VET+     + N  NSG
Sbjct:  160 EAMRGQALSCSLFSCVALGGLISGCPPAAVAPHMTTARACVAKFGGLSDRYAVSALILYAMASEYVGGQGPGTEYAKGMEAARAIFEGLPAKDKDPVLSAVLAHFMVLEGLPLLRLVETNAPTTNAANRCNSG 292

[Close]

BLAST of mRNA_L-elsbetiae_contig1865.5455.1 vs. uniprot
Match: A0A6H5KVF7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.580e-44
Identity = 78/128 (60.94%), Postives = 101/128 (78.91%), Query Frame = 0

Query:    2 QEKRGNALSCALFSCIAVGGLILGSPPSSVEPYMATARGYLAGLEGLSDRSAVSCLIVYAMANEYLTGRGPGSEYRKSMDSAKATFEGLPHKKRDPIISAVLTHFMVLDGFPLLQHVETSC-SVNPVN 128
            +  RG ALSC+LFSC+A+GGLI G PP++V P+M TAR  +A   GLSDR AVS LI+YAMA+EY+ G+GPG+EY K M++A+A FEGLP K +DP++SAVL HFMVL+G PLL+ VET+  + NP N
Sbjct:  160 EAMRGQALSCSLFSCVALGGLISGCPPAAVAPHMTTARACVAKFGGLSDRYAVSALILYAMASEYVGGQGPGTEYAKGMEAARAIFEGLPAKDKDPVLSAVLAHFMVLEGLPLLRLVETNAPTTNPAN 287

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1865.5455.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1865.5455.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LS50_ECTSI	2.440e-45	59.40	Pc21g14270 (Partial) (Fragment) n=1 Tax=Ectocarpus...	[more]
A0A6H5KVF7_9PHAE	1.580e-44	60.94	Zn(2)-C6 fungal-type domain-containing protein n=1...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 20..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..178
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..19
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..25 score: 0.552
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1865	contig	L-elsbetiae_contig1865:13388..14245 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1865.5455.1	mRNA_L-elsbetiae_contig1865.5455.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1865 13388..14245 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1865.5455.1 ID=prot_L-elsbetiae_contig1865.5455.1|Name=mRNA_L-elsbetiae_contig1865.5455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
PQEKRGNALSCALFSCIAVGGLILGSPPSSVEPYMATARGYLAGLEGLSD
RSAVSCLIVYAMANEYLTGRGPGSEYRKSMDSAKATFEGLPHKKRDPIIS
AVLTHFMVLDGFPLLQHVETSCSVNPVNSGRKRNGGGGGGGGGKKHTTSS
NSGNGTSAHTAADTRNDVDDEISSSSSS