prot_L-elsbetiae_contig18597.5434.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18597.5434.1
Unique Nameprot_L-elsbetiae_contig18597.5434.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length177
Homology
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BLAST of mRNA_L-elsbetiae_contig18597.5434.1 vs. uniprot
Match: D7FVG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG4_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.610e-37
Identity = 74/116 (63.79%), Postives = 84/116 (72.41%), Query Frame = 0 
Query:    1 RFQPFGRAGGEGAKVAERLYEDFGMSGRKQYSPEAADERKLVLKWLEEEIRMGPRGIADMVEQEPRLAEQDTEAVSARLAWLKERLLLSDEQIRSLVHRRPSVLCRSVEDGMEPKV 116
            RFQPFGRAGGEG+KVAERLYEDFG++  K+YSPEA DERK VL WLE ++RM  R IADMVEQEPR+AEQ+T A+SARL                     PSVLCRSV+D MEPKV
Sbjct:   77 RFQPFGRAGGEGSKVAERLYEDFGINNLKKYSPEATDERKRVLTWLEGKVRMSSRAIADMVEQEPRIAEQETGAISARLXXXXXXXXXXXXXXXXXXXXXPSVLCRSVDDSMEPKV 192
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18597.5434.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVG4_ECTSI3.610e-3763.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 131..163
e-value: 1.7
score: 17.6
coord: 94..126
e-value: 2.0E-4
score: 30.7
coord: 58..89
e-value: 1900.0
score: 1.7
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 56..167
e-value: 1.9E-12
score: 46.8
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 78..177
e-value: 2.9E-20
score: 74.6
NoneNo IPR availablePANTHERPTHR13068:SF130coord: 70..175
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 70..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18597contigL-elsbetiae_contig18597:548..2657 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18597.5434.1mRNA_L-elsbetiae_contig18597.5434.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18597 548..2657 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18597.5434.1 ID=prot_L-elsbetiae_contig18597.5434.1|Name=mRNA_L-elsbetiae_contig18597.5434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
RFQPFGRAGGEGAKVAERLYEDFGMSGRKQYSPEAADERKLVLKWLEEEI
RMGPRGIADMVEQEPRLAEQDTEAVSARLAWLKERLLLSDEQIRSLVHRR
PSVLCRSVEDGMEPKVRWLQGELGLTDAEVAAMVASAPNVLTISIEGSMA
PKLGWLSRRLMLSNEQLAMVVTTCPQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf