prot_L-elsbetiae_contig18438.5354.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18438.5354.1
Unique Nameprot_L-elsbetiae_contig18438.5354.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length133
Homology
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BLAST of mRNA_L-elsbetiae_contig18438.5354.1 vs. uniprot
Match: A0A6H5KCX2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX2_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.120e-34
Identity = 83/133 (62.41%), Postives = 92/133 (69.17%), Query Frame = 0 
Query:    7 VRWASVFLGVALVLRSSQVECSRARRRHHATPATHTNGDGNPSLVSPKDGMIREESSIPGVSIWTSKTAAFSKTPT-----PPSLHTNAAATTSYYRG--NDEVAVFSGDCQDGNGGIGDADVEPPSRGARED 132
            VR AS+ LGV LVL S  VECSRARRRHH TPA + N   NPSLVSP+ GMIREESSIPGVSIW SK AA S               + A++ S Y G  N E A F+G+CQDG GGIGDADVEPPSRGARE+
Sbjct:    5 VRPASLLLGVGLVLLSP-VECSRARRRHHPTPAAYANSGENPSLVSPQQGMIREESSIPGVSIWFSKKAAASSASARRXXXXXXXXADPASSASSYCGDSNAEPAEFAGECQDGRGGIGDADVEPPSRGAREE 136
[Close]
BLAST of mRNA_L-elsbetiae_contig18438.5354.1 vs. uniprot
Match: D8LRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRV9_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.930e-32
Identity = 77/131 (58.78%), Postives = 86/131 (65.65%), Query Frame = 0 
Query:    7 VRWASVFLGVALVLRSSQVECSRARRRHHATPATHTNGDGNPSLVSPKDGMIREESSIPGVSIWTSKTAAFSKTPTPPSLHTNAAA-----TTSYYRGNDEVAVFSGDCQDGNGGIGDADVEPPSRGARED 132
            VR AS+ LGV LVL S  VECSRARRRHH TPA + N   NPSLV+P+ G+IREESSIPGVSIWTS+ A                       +SY   N E A F G+CQDG GGIGDADVEPPSRGARE+
Sbjct:    5 VRPASLLLGVGLVLLSP-VECSRARRRHHPTPAAYANSGDNPSLVTPQQGLIREESSIPGVSIWTSRRAXXXXXXXXXXXXXXXXXXXXXXASSYCYSNAEPAGFPGECQDGRGGIGDADVEPPSRGAREE 134
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18438.5354.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCX2_9PHAE1.120e-3462.41AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LRV9_ECTSI2.930e-3258.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..133
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.605

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18438contigL-elsbetiae_contig18438:557..1871 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18438.5354.1mRNA_L-elsbetiae_contig18438.5354.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18438 557..2004 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18438.5354.1 ID=prot_L-elsbetiae_contig18438.5354.1|Name=mRNA_L-elsbetiae_contig18438.5354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
MGLLPHVRWASVFLGVALVLRSSQVECSRARRRHHATPATHTNGDGNPSL
VSPKDGMIREESSIPGVSIWTSKTAAFSKTPTPPSLHTNAAATTSYYRGN
DEVAVFSGDCQDGNGGIGDADVEPPSRGAREDQ
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