prot_L-elsbetiae_contig184.5337.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig184.5337.1
Unique Nameprot_L-elsbetiae_contig184.5337.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length172
Homology
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BLAST of mRNA_L-elsbetiae_contig184.5337.1 vs. uniprot
Match: D8LLR3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR3_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 1.640e-88
Identity = 137/172 (79.65%), Postives = 158/172 (91.86%), Query Frame = 0 
Query:    1 MARFSAFAFLAIFTSATSAFMTPLAGAQLGRRAVSANVATTRMSAAPA--TAAPTAADLRKMAEACQEDGCSVETVANLLDQLKSKKKELQMQLVTVDDVLEMMGDTSNLGEKGELEKLIEAVGRVFSTNDGSDYIPYPTGYSGEVNKEKKDAWDYNVNTPLKPVKPVYSSK 170
            MARFSAFAFLAIFTSA +AF+TPLAG Q+GRR+ SANVATTRMSA+PA  TA PTA +L+ MA +CQEDGCSVETV+ LL+QLK+KKKEL+MQLVTVDDVL +MGD+S+L EKGELEKL+EAVGRVFSTNDG+DYIP+PTGYSGEVNK++KDAWDYNVNTPLKPVKPVY  +
Sbjct:    1 MARFSAFAFLAIFTSAATAFVTPLAGVQMGRRSASANVATTRMSASPAPMTAPPTAQELKDMALSCQEDGCSVETVSTLLNQLKTKKKELEMQLVTVDDVLTIMGDSSSLAEKGELEKLVEAVGRVFSTNDGTDYIPFPTGYSGEVNKKQKDAWDYNVNTPLKPVKPVYKKE 172
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BLAST of mRNA_L-elsbetiae_contig184.5337.1 vs. uniprot
Match: A0A7S0LGX7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGX7_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 1.300e-6
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 0 
Query:   60 MAEACQEDGCSVETVANLLDQLKSKKKELQMQLVTVDDVLEMMGDTSNLGE--KGELEKLIEAVGRVFSTNDGSDYIPYPTGYSGEVNKEKK 149
            +A+AC ++GCSV+TV +L+ +LK + K L  ++  V  +L  +   S + E  K E+EKL+ A  R FS  +G ++   P GYS + +   K
Sbjct:   55 VAKACLDEGCSVDTVDDLITELKEESKALTSRMQAVLILLGRLEALSGMPEANKSEIEKLVGAASRSFSVVEGFEFKGEPLGYSLKPSMRNK 146
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig184.5337.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLR3_ECTSI1.640e-8879.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0LGX7_9EUKA1.300e-635.87Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 71..98
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..171
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.824
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig184contigL-elsbetiae_contig184:24755..28638 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig184.5337.1mRNA_L-elsbetiae_contig184.5337.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig184 24721..29284 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig184.5337.1 ID=prot_L-elsbetiae_contig184.5337.1|Name=mRNA_L-elsbetiae_contig184.5337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MARFSAFAFLAIFTSATSAFMTPLAGAQLGRRAVSANVATTRMSAAPATA
APTAADLRKMAEACQEDGCSVETVANLLDQLKSKKKELQMQLVTVDDVLE
MMGDTSNLGEKGELEKLIEAVGRVFSTNDGSDYIPYPTGYSGEVNKEKKD
AWDYNVNTPLKPVKPVYSSKE*
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